View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2445_high_12 (Length: 375)

Name: NF2445_high_12
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2445_high_12
NF2445_high_12
[»] chr2 (7 HSPs)
chr2 (30-366)||(2327185-2327521)
chr2 (43-363)||(2321335-2321655)
chr2 (44-363)||(2294020-2294339)
chr2 (43-363)||(2310351-2310671)
chr2 (51-363)||(2303633-2303945)
chr2 (50-366)||(2351206-2351522)
chr2 (56-366)||(2330900-2331210)
[»] chr8 (2 HSPs)
chr8 (50-344)||(41127234-41127531)
chr8 (154-270)||(26494893-26495009)
[»] chr4 (1 HSPs)
chr4 (240-287)||(55017070-55017117)
[»] chr5 (1 HSPs)
chr5 (155-276)||(15176287-15176408)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 2327521 - 2327185
Alignment:
Q  30 ttatctacatacgcataacacacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaa 129  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  2327521 ttatctacatacgcataacacacataatctatattctatgagaaatatgaacttgcaatggatttttcatcaccacggtgaattcaaatttttctgacaa 2327422  T
Q  130 atcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaa 229  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327421 atcgacatggccaccctccggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaa 2327322  T
Q  230 attcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattg 329  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327321 attctcctaccagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattg 2327222  T
Q  330 gatcctcccaaacacgaggatccaaccccatctctgc 366  Q
    |||||||||||||||||||||||||||||||||||||    
T  2327221 gatcctcccaaacacgaggatccaaccccatctctgc 2327185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 43 - 363
Target Start/End: Complemental strand, 2321655 - 2321335
Alignment:
Q  43 cataacacacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggcca 142  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||  |||||||||  ||||||||||||||| |||||||||    
T  2321655 cataacacacataatctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggcca 2321556  T
Q  143 ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcag 242  Q
    ||||| |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||| ||  |||    
T  2321555 ccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccag 2321456  T
Q  243 ctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaac 342  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321455 ctccaaacggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaac 2321356  T
Q  343 acgaggatccaaccccatctc 363  Q
    |||||||||| || |||||||    
T  2321355 acgaggatcccacgccatctc 2321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 44 - 363
Target Start/End: Complemental strand, 2294339 - 2294020
Alignment:
Q  44 ataacacacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccac 143  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||   | |||||| |||||| ||||| || |    
T  2294339 ataacacacataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacatgcccgc 2294240  T
Q  144 cctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagc 243  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||  ||||    
T  2294239 cctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagc 2294140  T
Q  244 tccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaaca 343  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  2294139 tccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaacgggtcctcccaaaca 2294040  T
Q  344 cgaggatccaaccccatctc 363  Q
    |||||||||||| |||||||    
T  2294039 cgaggatccaacgccatctc 2294020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 43 - 363
Target Start/End: Complemental strand, 2310671 - 2310351
Alignment:
Q  43 cataacacacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggcca 142  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||  ||||||||   | |||||| |||||| ||||| ||     
T  2310671 cataacacacataatctatatcctaggagaaatatgaacttgcactggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccg 2310572  T
Q  143 ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcag 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||  |||    
T  2310571 ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccag 2310472  T
Q  243 ctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaac 342  Q
    ||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  2310471 ctccaaacggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaac 2310372  T
Q  343 acgaggatccaaccccatctc 363  Q
    |||| |||||||| |||||||    
T  2310371 acgacgatccaacgccatctc 2310351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 51 - 363
Target Start/End: Complemental strand, 2303945 - 2303633
Alignment:
Q  51 acataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctgg 150  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||   |||||||   ||||||||||||||| |||| ||| ||||||||    
T  2303945 acataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctgg 2303846  T
Q  151 aaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaac 250  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||  | | ||||||||||| || |||||| |||||    
T  2303845 aagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaac 2303746  T
Q  251 ggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggat 350  Q
    ||||||||||| ||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2303745 ggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaacctttctggcttaaactccattggatcctcccaaacacgaggat 2303646  T
Q  351 ccaaccccatctc 363  Q
    || ||||||||||    
T  2303645 cccaccccatctc 2303633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 50 - 366
Target Start/End: Complemental strand, 2351522 - 2351206
Alignment:
Q  50 cacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctg 149  Q
    ||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||| ||||||||   ||||||||||||||| ||||| ||||| ||||    
T  2351522 cacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctg 2351423  T
Q  150 gaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||| ||||| ||| || | |||||    
T  2351422 gaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaa 2351323  T
Q  250 cggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgagga 349  Q
     ||||||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2351322 tggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgagga 2351223  T
Q  350 tccaaccccatctctgc 366  Q
    ||| |||||||||||||    
T  2351222 tcccaccccatctctgc 2351206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 56 - 366
Target Start/End: Complemental strand, 2331210 - 2330900
Alignment:
Q  56 atctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaacct 155  Q
    ||||| |||||  ||||||||||| | ||||||||||||| ||| ||||  ||||||||   ||| || |||||||| ||  | |||||||| |||||||    
T  2331210 atctagatccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaacct 2331111  T
Q  156 tccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcat 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||  |||||||||| |||||    
T  2331110 tccaatcgaaattccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaatggcat 2331011  T
Q  256 catcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaac 355  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  2331010 catctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgagggtccaac 2330911  T
Q  356 cccatctctgc 366  Q
    |||||||||||    
T  2330910 cccatctctgc 2330900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 50 - 344
Target Start/End: Complemental strand, 41127531 - 41127234
Alignment:
Q  50 cacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggcca---ccct 146  Q
    |||||||| || |||||| |||||||||||||||||| |||||||| ||| |||||||||||||||  ||||||||||||||| ||||  |||   ||||    
T  41127531 cacataatttagatcctaggagaaatatgaacttgcagtggatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccct 41127432  T
Q  147 ctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctcc 246  Q
    || ||| ||||||||  |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||  || ||||    
T  41127431 ctagaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactcc 41127332  T
Q  247 aaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacac 344  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  41127331 aaacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaacac 41127234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 26495009 - 26494893
Alignment:
Q  154 cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggc 253  Q
    |||||| || || ||| ||||||||||||| ||||| ||||| |||||||| |  || || |||||  | |||||||| || ||  | ||||||||||||    
T  26495009 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 26494910  T
Q  254 atcatcttgatctcttt 270  Q
    |||||||| ||||||||    
T  26494909 atcatctttatctcttt 26494893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 55017117 - 55017070
Alignment:
Q  240 cagctccaaacggcatcatcttgatctctttactccctgtaatatcaa 287  Q
    |||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  55017117 cagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa 55017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 15176287 - 15176408
Alignment:
Q  155 ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggca 254  Q
    ||||| || |||||| |||| ||||| || ||||| |||||||| || |  || ||||||  ||| || ||||| ||||| ||  | |||||||| ||||    
T  15176287 ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca 15176386  T
Q  255 tcatcttgatctctttactccc 276  Q
    ||||||| ||||||||||||||    
T  15176387 tcatctttatctctttactccc 15176408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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