View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2445_high_18 (Length: 325)

Name: NF2445_high_18
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2445_high_18
NF2445_high_18
[»] chr3 (4 HSPs)
chr3 (1-296)||(5373864-5374159)
chr3 (208-296)||(5367517-5367605)
chr3 (172-285)||(5355837-5355949)
chr3 (213-285)||(5362309-5362381)
[»] chr1 (2 HSPs)
chr1 (1-55)||(10310773-10310827)
chr1 (1-55)||(30718114-30718168)
[»] chr5 (1 HSPs)
chr5 (1-55)||(40271058-40271112)
[»] chr7 (1 HSPs)
chr7 (1-50)||(27456035-27456084)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 5373864 - 5374159
Alignment:
Q  1 tttttgattcttgaggaattcgtgagaaatttctctcgttatatagcattgctgtattttgtttgtttataaaaagagaaattcatggttagttttcctt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5373864 tttttgattcttgaggaattcgtgagaaatttctcgcgttatatagcattgctgtattttgtttgtttataaaaagagaaattcatggttagttttcctt 5373963  T
Q  101 ccgtgacaattacctaaaaccctaatcatcatcatcttgccacaccctcataaacactttttattttgtccattatttgcgtttccaatcactttgtttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5373964 ccgtgacaattacctaaaaccctaatcatcatcatcttgccacaccctcagaaacactttttattttgtccattatttgcgtttccaatcactttgtttc 5374063  T
Q  201 ttcccgtaacaatgattcttccattcgaacccaaaatacagagaataacagcaaaccctaacacgaatatggaaaacaaggaagaagacagactct 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374064 ttcccgtaacaatgattcttccattcgaacccaaaatacagagaataacagcaaaccctaacacgaatatggaaaacaaggaagaagacagactct 5374159  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 5367517 - 5367605
Alignment:
Q  208 aacaatgattcttccattcgaacccaaaatacagagaataacagcaaaccctaacacgaatatggaaaacaaggaagaagacagactct 296  Q
    |||||||||| ||||| |||||||||||| | ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  5367517 aacaatgatttttccactcgaacccaaaacaaagagaataacaacaaaccccaacacgaatattgaaaacaaggaagaagacagactct 5367605  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 5355837 - 5355949
Alignment:
Q  172 attatttgcgtttccaatcactttgtttcttcccgtaacaatgattcttccattcgaacccaaaatacagagaataacagcaaaccctaacacgaatatg 271  Q
    |||||||| ||||||  |||||||| |||| || |||||||||||| ||||| |||||||||| | | ||||||||||| |||||||||||| ||||||     
T  5355837 attatttgtgtttcccttcactttgcttct-cctgtaacaatgatttttccactcgaacccaatacagagagaataacaacaaaccctaacaggaatatt 5355935  T
Q  272 gaaaacaaggaaga 285  Q
    |||||||| |||||    
T  5355936 gaaaacaatgaaga 5355949  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 5362309 - 5362381
Alignment:
Q  213 tgattcttccattcgaacccaaaatacagagaataacagcaaaccctaacacgaatatggaaaacaaggaaga 285  Q
    |||||||||  | ||||||||||| | ||||||| ||| |||||||||||| |||||| ||||||||||||||    
T  5362309 tgattcttctgtccgaacccaaaacaaagagaattacaacaaaccctaacatgaatattgaaaacaaggaaga 5362381  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10310773 - 10310827
Alignment:
Q  1 tttttgattcttgaggaattcgtgagaaatttctctcgttatatagcattgctgt 55  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  10310773 tttttgattcttgaggaattcgtgagaaatctctcgcgttatatagcattgctgt 10310827  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30718114 - 30718168
Alignment:
Q  1 tttttgattcttgaggaattcgtgagaaatttctctcgttatatagcattgctgt 55  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  30718114 ttttttattcttgaggaattcgtgagaaatctctcgcgttatatagcattgctgt 30718168  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40271058 - 40271112
Alignment:
Q  1 tttttgattcttgaggaattcgtgagaaatttctctcgttatatagcattgctgt 55  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  40271058 tttttgattcttgaggaattcgtgagaaatctttcgcgttatatagcattgctgt 40271112  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27456035 - 27456084
Alignment:
Q  1 tttttgattcttgaggaattcgtgagaaatttctctcgttatatagcatt 50  Q
    ||||| |||||||||||||||||||||||| |||| ||||||||||||||    
T  27456035 ttttttattcttgaggaattcgtgagaaatctctcgcgttatatagcatt 27456084  T

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