View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2445_high_30 (Length: 251)
Name: NF2445_high_30
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_high_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 38372710 - 38372487
Alignment:
| Q |
13 |
tctttatgttttattatcgtcattgattggctaatttggcttttgtctagtaatttcattcaacaaaaccaataatgcactagactattaaatctaattt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38372710 |
tctttatgttttattatcgtcattgattggctaatttggcttttgtctagtaatttcattcaacaaaaccaataatgcactagactattaaatctaattt |
38372611 |
T |
|
| Q |
113 |
ttt-aattaatttaaaacaaactaatcacaatcacaccaaacaaataagtcaagatacaatctaatccttcccatggtgatcacaatttgcatttttccc |
211 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38372610 |
ttttaattaatttaaaacaaactaatcacaatcacaccaaacaaataagtcaagatacaatctaatccttcccatggtgatcacaatttgcattttttcc |
38372511 |
T |
|
| Q |
212 |
accaaaatgccgaattgtccgcaa |
235 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38372510 |
accaaaatgccgaattgtccgcaa |
38372487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 38367574 - 38367424
Alignment:
| Q |
18 |
atgttttattatcgtcattgattggctaatttggcttttgtctagtaatttcattcaacaaaaccaataatgcactaga--ctattaaatctaatttttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| | ||| ||||| | | ||| |
|
|
| T |
38367574 |
atgttttattatcgtcattgattggctaatttggctttttttgtctgatttcattcaacaaaaccaataatgcactaaatcatatctaatctgaatcttt |
38367475 |
T |
|
| Q |
116 |
aattaatttaaaacaaactaatcacaatcacaccaaacaaataagtcaaga |
166 |
Q |
| |
|
|||||| || |||||||||| ||| |||| |||||| |||||||||||||| |
|
|
| T |
38367474 |
aattaaatttaaacaaactattcaaaatctcaccaagcaaataagtcaaga |
38367424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 12076755 - 12076694
Alignment:
| Q |
115 |
taattaatttaaaacaaactaatcacaatcacaccaaacaaataagtcaagatacaatctaa |
176 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
12076755 |
taattaaattagaacaaactaatcacaatcacatcaaacaaataagtcaatattcaatctaa |
12076694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University