View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_high_33 (Length: 238)
Name: NF2445_high_33
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40565845 - 40566069
Alignment:
| Q |
1 |
ctgttgccaaaaactatagttacattataataaatgttagaaaaatacggttttaatttgatcgttacagtcattgcaggaatattcaatcattttgact |
100 |
Q |
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| T |
40565845 |
ctgttaccaaaaactaaagttacattataataaatgttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgact |
40565944 |
T |
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| Q |
101 |
tttctattattaaggttacaaggagaataaataaatactaaacaaaatctaaggatttgtataccgatgaacctgnnnnnnntagcaaagccatggctgt |
200 |
Q |
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| T |
40565945 |
tttctattattaaggttacaaggagaataaataaatactaaacaaaatctaaggatttgtataccgatgaacctgaaaaaaatagcaaagccatggctgt |
40566044 |
T |
|
| Q |
201 |
gcactcaaaacaattgctgctgatg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
40566045 |
gcactcaaaacaattgctgctgatg |
40566069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40570542 - 40570582
Alignment:
| Q |
1 |
ctgttgccaaaaactatagttacattataataaatgttaga |
41 |
Q |
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|||||||||||||||| |||||||||| ||||||| ||||| |
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| T |
40570542 |
ctgttgccaaaaactaaagttacattaaaataaatattaga |
40570582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8490237 - 8490271
Alignment:
| Q |
1 |
ctgttgccaaaaactatagttacattataataaat |
35 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
8490237 |
ctgttgccaaaaactaaagttacattataataaat |
8490271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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