View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_high_6 (Length: 558)
Name: NF2445_high_6
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 30 - 546
Target Start/End: Original strand, 39235612 - 39236128
Alignment:
| Q |
30 |
tcttcgtgtaatctcttcatgaaaacatatgcacttgtacacgaatcatacaaaatgcacgaataattttatagttaagctgtgagattcttagcactat |
129 |
Q |
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| T |
39235612 |
tcttcgtgtaatctcttcatgaaaacatatgcacttgtacacgaatcatacaaaatgcacgaataattttatagttaagctgtgagattcttagcactat |
39235711 |
T |
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| Q |
130 |
ggttctcaattcttattcatatcagccaaaacaaaatgaaagtttggacaataactgttaaaatctaattgtcaaattatatcacacattgagctaaaaa |
229 |
Q |
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| T |
39235712 |
ggttctcaattcttattcatatcagccaaaacaaaatgaaagtttggacaataactgttaaaatctaattgtcaaattatatcacacattgagctaaaaa |
39235811 |
T |
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| Q |
230 |
attgcacttctattacataatgatattgtatccttgtttgtacattttgtacaggagttataaaagcaaataattcttacacatgaacatctaattcaaa |
329 |
Q |
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| T |
39235812 |
attgcacttctattacataatgatattgtatccttgtatgtacattttgtacaggagttataaaagcaaataattcttacacatgaacatctaattcaaa |
39235911 |
T |
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| Q |
330 |
agttaaaaataaaagaagaaaagttagtagaagaagttattattttgttgtcacaccaagtattaggaaccaacaaaatataatcacaatcacaaccttt |
429 |
Q |
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| T |
39235912 |
agttaaaaataaaagaagaaaagttagtagaagaagtaattatttttttgtcacaccaagtattaggaaccaacaaaatataatcacaatcacaaccttt |
39236011 |
T |
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| Q |
430 |
ctgtattaaaaacagattgatgcccccttggtggtgtaacagaatgatgactaacataatcttcatttgttaacactggtgttcccaatccatcttcagt |
529 |
Q |
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| T |
39236012 |
ctgtattaaaaacagattgatgcccccttggtggtgtaacagaatgatgactaacataatcttcatttgttaacactggtgttcccaatccatcttcagt |
39236111 |
T |
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| Q |
530 |
accagctccaacatatt |
546 |
Q |
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| T |
39236112 |
accagctccaacatatt |
39236128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 39235447 - 39235504
Alignment:
| Q |
187 |
ttaaaatctaattgtcaaattatatcacacattgagctaaaaaattgcacttctatta |
244 |
Q |
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| T |
39235447 |
ttaaaatctaattgtcaaattatatcacacgttgagctaagaaattgcacttctatta |
39235504 |
T |
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