View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2445_high_8 (Length: 442)

Name: NF2445_high_8
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2445_high_8
NF2445_high_8
[»] chr2 (2 HSPs)
chr2 (30-344)||(4624873-4625189)
chr2 (345-432)||(4625214-4625303)
[»] chr4 (1 HSPs)
chr4 (33-98)||(5330162-5330227)
[»] chr5 (1 HSPs)
chr5 (33-98)||(20434272-20434337)
[»] chr7 (2 HSPs)
chr7 (33-98)||(25604037-25604102)
chr7 (33-85)||(25623250-25623302)
[»] chr1 (1 HSPs)
chr1 (175-208)||(46335497-46335530)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 344
Target Start/End: Original strand, 4624873 - 4625189
Alignment:
Q  30 ggaggacctaattctaatgactatggtactaacagaattcttcatcatactattggtttacctgatttttcgcaagagcttcgttgctttcaaacgatca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4624873 ggaggacctaattctaatgactatggtactaacagaattcttcatcatactattggtttacctgatttttcgcaagagcttcgttgctttcaaacgatca 4624972  T
Q  130 catgttttcaggtgagcaattagcaacaccaacactgatactcactcgagtcaacaaaagttgatgtatctggttc--aaaaaatcaaatagatgtattt 227  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  4624973 catgttttcaggtgagcagttagcaacaccaacactcatactcactcgagtcaacaaaagttgatgtatctggttcaaaaaaaatcaaatagatgtattt 4625072  T
Q  228 ggttcaaaaacatatacatcaactttttgttgacccaaaattttcatccgtgggagtaatagtttgagaatatagaataattgaatataacgcgtgtgtc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4625073 ggttcaaaaacatatacatcaactttttgttgacccaaaattttcatccgtgggagtaatagtttgagaatatagaataattgaatataacgcgtgtctc 4625172  T
Q  328 ggtggacatgtgtcaga 344  Q
    |||||||||||||||||    
T  4625173 ggtggacatgtgtcaga 4625189  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 345 - 432
Target Start/End: Original strand, 4625214 - 4625303
Alignment:
Q  345 agttatccgacacatctttaatatgaattgttgttgctac--atatatcacacatgtctattttgatcattgagaatttgatgatattgt 432  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4625214 agttatccgacacatctttaatatgaattgttgttgctacatatatatcacacatgtctattttgatcactgagaatttgatgatattgt 4625303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 5330162 - 5330227
Alignment:
Q  33 ggacctaattctaatgactatggtactaacagaattcttcatcatactattggtttacctgatttt 98  Q
    ||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||    
T  5330162 ggacctaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgatttt 5330227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 20434272 - 20434337
Alignment:
Q  33 ggacctaattctaatgactatggtactaacagaattcttcatcatactattggtttacctgatttt 98  Q
    ||||| ||||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||    
T  20434272 ggaccaaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgatttt 20434337  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 25604037 - 25604102
Alignment:
Q  33 ggacctaattctaatgactatggtactaacagaattcttcatcatactattggtttacctgatttt 98  Q
    ||||| ||||||||||| ||||| ||||  || ||||||||||||||||||||| | |||||||||    
T  25604037 ggacccaattctaatgattatgggactagtaggattcttcatcatactattggtgttcctgatttt 25604102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 25623250 - 25623302
Alignment:
Q  33 ggacctaattctaatgactatggtactaacagaattcttcatcatactattgg 85  Q
    |||||||| || ||||| ||||| | |||||| ||||||||||||||||||||    
T  25623250 ggacctaactccaatgattatggaagtaacaggattcttcatcatactattgg 25623302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 46335497 - 46335530
Alignment:
Q  175 tcgagtcaacaaaagttgatgtatctggttcaaa 208  Q
    ||||||||||||||||| ||||||||||||||||    
T  46335497 tcgagtcaacaaaagttaatgtatctggttcaaa 46335530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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