View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_10 (Length: 449)
Name: NF2445_low_10
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 370
Target Start/End: Original strand, 3361187 - 3361531
Alignment:
| Q |
22 |
aatatcatctaaagcactgaacttcatgtaattaaagccaaaccttgccatgagaatcttgccgatgatcttcaagtaaagccttcattatttcatgaag |
121 |
Q |
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| T |
3361187 |
aatatcatctaaagcactgaacttcatgtaa----agccaaaccttgccatgtgaatcttgccgatgatcttcaagtaaagccttcattatttcatgaag |
3361282 |
T |
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| Q |
122 |
tgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcagcgtcaagttggtcgattctt |
221 |
Q |
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| T |
3361283 |
tgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgaccgcagcgtcaagttggtcgattctt |
3361382 |
T |
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| Q |
222 |
ttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaattt |
321 |
Q |
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| T |
3361383 |
ttggtcaaagcactacaacaaatttcaggccagttttcatgctcaatacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaattt |
3361482 |
T |
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| Q |
322 |
caacatctgccttggtgttcaaaattctcaaaacttgaacacatgattc |
370 |
Q |
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| T |
3361483 |
caacatctgccttggtgttcaaaattctcaaaacttgaacacatgattc |
3361531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 364
Target Start/End: Original strand, 35907360 - 35907622
Alignment:
| Q |
102 |
gccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcag |
201 |
Q |
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| T |
35907360 |
gccttcactatttcatgaagtctctcagctggtccactatccaatagtagctgcacctctgcatcatcagcatgaccactcttcaaagtgttaaccgcaa |
35907459 |
T |
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| Q |
202 |
cgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatc |
301 |
Q |
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| ||||| |||| |||| ||| |||||| || | || || ||||||||||||||||||| ||||| |||||||| ||||||| |||| || ||||| |
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| T |
35907460 |
catcaagctggttgattttttctgtcaaaccattgcagcatatttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagatt |
35907559 |
T |
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| Q |
302 |
attttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacaca |
364 |
Q |
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| T |
35907560 |
catttccaattgctcaatctcattatctgcattggtgatcatacatctcaaaacctgaacaca |
35907622 |
T |
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