View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_12 (Length: 437)
Name: NF2445_low_12
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 28 - 402
Target Start/End: Original strand, 23447076 - 23447439
Alignment:
| Q |
28 |
cagcaaggttattagaatcttcggaaagttctataccaagtcagtattctggttatatacaaaacgttcagagcaacaatctaggtactgtaattgcttc |
127 |
Q |
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| T |
23447076 |
cagcaaggttattagaatcttcggaaagttctataccaagtcagtattctggttatatacaaaacgttcagagcaacagtctaggtactgtaattgcttc |
23447175 |
T |
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| Q |
128 |
tctccccttaaaccggagcaatttatcattcttgattgcgatccttcatggttgcactatgttccaagaacaaaatccactttattaatggcactttgcc |
227 |
Q |
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| T |
23447176 |
tctccccttaaaccggagcaatttatcattcttgatcgcgat-----------gcattatgttccaagaacaaaatccactttattaatggcagtttgcc |
23447264 |
T |
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| Q |
228 |
aagaccatctaatgaagatcatgactccaagactgttgcaacaccatggttatgtcatggattaatagttcagtgaacgctgaaattgcctgaagcatgt |
327 |
Q |
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| T |
23447265 |
aagaccatctaatgaagatcatgactccaagactgttgcaacaccatggttatgtcatggattaatagttcagtgaacgctaaaattgactgaagcatgt |
23447364 |
T |
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| Q |
328 |
tctagatggatactgttactgaaattccccaatgatttggtcactgaactacagagtattccaaaacactgcagc |
402 |
Q |
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| T |
23447365 |
tctagatggatgctgttactgaaattccccaatgatttggtcactgaactacagagtattctaaaacactgcagc |
23447439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 390
Target Start/End: Complemental strand, 23878275 - 23878242
Alignment:
| Q |
357 |
caatgatttggtcactgaactacagagtattcca |
390 |
Q |
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| T |
23878275 |
caatgatttggtcactgaactgcagagtattcca |
23878242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 23421059 - 23421099
Alignment:
| Q |
357 |
caatgatttggtcactgaactacagagtattccaaaacact |
397 |
Q |
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| T |
23421059 |
caataatttggtcactgaactgcagagtattccataacact |
23421099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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