View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_16 (Length: 378)
Name: NF2445_low_16
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 9026969 - 9026716
Alignment:
| Q |
29 |
atcattatcagaaaaccccatatccacctaaaactaagttccaatggtatatttgttttaagccctgaattatttttagttcatgatggtatataannnn |
128 |
Q |
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| T |
9026969 |
atcattatcagaaaaccccatatccacctaaaactaagttccaatggtagatttgttttaagccctgaattatttttagttcatgatggtatacaatttt |
9026870 |
T |
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| Q |
129 |
nnnnnnnnnn-atgtcgtgtgttatagattagggcatgcagttgaaataaagacataatagtcaaagatttggac-gtagtatagtgctataactgtata |
226 |
Q |
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| T |
9026869 |
tttgttttgttatgtcgtgtgttatagattagggcatgcagttgaaataaagacataatagtcaaagatttggacagtagtatagtgctataactgtata |
9026770 |
T |
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| Q |
227 |
caaaggacaattatacagtgcttgcttggctacatttcaaccagagggtctgtg |
280 |
Q |
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| T |
9026769 |
caaaggacaattatacagtgcttgcttggctacatttcaaccagagggtttgtg |
9026716 |
T |
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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 34899975 - 34899918
Alignment:
| Q |
321 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctc |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctc |
34899918 |
T |
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