View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2445_low_18 (Length: 364)
Name: NF2445_low_18
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 30 - 355
Target Start/End: Original strand, 23018745 - 23019070
Alignment:
| Q |
30 |
aaaagatatgacaagtagaggactagtagagccatggtaaagaaagatagtattatgtattatgtgctaccattttgtggtttttatacatatgatatga |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
23018745 |
aaaagatatgacaagtagagggctagtagagccatggaaaagaaagatagtattatgtattatgtgctactattttgtggtttatatacatatgatatga |
23018844 |
T |
|
| Q |
130 |
tatacaatcgagacattattgatatagttaaaaatatagagttgaatctgagatacttatacaaatccaatggttccctcgtggtcaataaaaaatgctg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23018845 |
tatacaatcgagacattattgatatagttaaaaatatagagttgaatctgagatacttatacaaatccaatggttccctcgtggtcaataaaaaatgctg |
23018944 |
T |
|
| Q |
230 |
ttatgtccttttccatggaaagtaaacgagagggacattttggaagcataatacgtgtnnnnnnnnnnnnnnnnnnnnngttatttaattagaacgtata |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23018945 |
ttatgtccttttccatggaaagtaaacgagaggaacattttggaagcataatacgtgtcaaaaattacaaaacaaaaaagttatttaattagaacgtata |
23019044 |
T |
|
| Q |
330 |
cactgaagttactaattcagaataat |
355 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
23019045 |
cactgaagttactaattcagaataat |
23019070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 23141759 - 23141833
Alignment:
| Q |
30 |
aaaagatatgacaagtagaggactagtagagccatggtaaagaaaga---tagtattatgtattatgtgctacca |
101 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||||||||| | ||||||||| | ||||||||||| |
|
|
| T |
23141759 |
aaaatatatgacaagtagatgactagtagagccatggaaaagaaagaaagttgtattatgtgtcatgtgctacca |
23141833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 23025759 - 23025805
Alignment:
| Q |
30 |
aaaagatatgacaagtagaggactagtagagccatggtaaagaaaga |
76 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
23025759 |
aaaatatatgacaagtagaggactagtaaagccatggaaaagaaaga |
23025805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 23147405 - 23147441
Alignment:
| Q |
30 |
aaaagatatgacaagtagaggactagtagagccatgg |
66 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
23147405 |
aaaatatatggcaagtagaggactagtagagccatgg |
23147441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University