View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_19 (Length: 358)
Name: NF2445_low_19
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 52 - 295
Target Start/End: Original strand, 5509011 - 5509252
Alignment:
| Q |
52 |
cctttaataccacacattcactcaaatatcatgtcaaaacaatgaatctcttccataaccaatagtaatctttatcattgttttagcttgatcaatctgg |
151 |
Q |
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| T |
5509011 |
cctttaataccacacattcactcaaatatcatgtcaaaacagtgaatctcttccataaccaatagtaatctttatcattgttttagcttgatcaatctgt |
5509110 |
T |
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| Q |
152 |
aactaatcccatacatggactaccaactaccccacaatatatcaatccatatattttttagccaaaatgttaaacaataaatctttcttctccactctaa |
251 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5509111 |
aactaatcccatacatgaactaccaactaccccacaatatatcaatcc--atattttttagccaaaatgttaaacaataaatctttcttctccactctaa |
5509208 |
T |
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| Q |
252 |
acctctaacacaattatgcttacaatgcataatcgtttgtgcgt |
295 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5509209 |
acctcaaacacaattatgcttacaatgcataatcgtttgtgcgt |
5509252 |
T |
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