View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_20 (Length: 358)
Name: NF2445_low_20
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 28 - 349
Target Start/End: Complemental strand, 4327583 - 4327262
Alignment:
| Q |
28 |
catgaaatacagctgataatattggtgactaagttgccatgtctgctgaattacagaatttccttaaatcttatgtttgtagcgaagacacacgcacgcg |
127 |
Q |
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| T |
4327583 |
catgaaatacagctgataatattggtgactaagttgccatgtctgctgaattacagaatttccttaaatcttatgtttgtagcgaagacacacgcacgcg |
4327484 |
T |
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| Q |
128 |
tatcatcatcgagattttaaactgtgatcatagtctttgttgtcgcatgttgcgatgtttgataatatgaaaaatcacacttaaatgtgactgatgtgat |
227 |
Q |
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| T |
4327483 |
tatcatcatcgagattttaaactgtgatcatagtctttgttgtcgcatgttgcgatgtttgataatatgaaaaatcacacttaaatgtgactgatgtgat |
4327384 |
T |
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| Q |
228 |
cacaattgtggctgtgctattattttggtacctcaaacttttatactctatcatctatttaggactgcagtttaaaatgatgatcatcaaagctactaca |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4327383 |
cacaattgtggctgtgctattattttggtacctcaaacttttatactctatcatctatttaggactgcagtttaaaatgatgatcatcaaagctactaca |
4327284 |
T |
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| Q |
328 |
gatgtgtactttaaagtataat |
349 |
Q |
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|||||||||||||||||||||| |
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| T |
4327283 |
gatgtgtactttaaagtataat |
4327262 |
T |
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