View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2445_low_21 (Length: 357)
Name: NF2445_low_21
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 26175339 - 26175549
Alignment:
| Q |
30 |
atattttcatcggtttggaatgcattgaattgcattannnnnnnaaataaataaatcaatttccatcggatttacctgcagatagtttttctcttgataa |
129 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||||||| |||||||||||||||||||| | | || |||||||||| |||||||||||||||| |
|
|
| T |
26175339 |
atattttcatcgttctggaatacattgaattgcattattttttaaaataaataaatcaatttcctccagtttgacctgcagattgtttttctcttgataa |
26175438 |
T |
|
| Q |
130 |
attttcatgcagattttcctg---catagtttgctgcagatatacctgcaagtatgttcgcaggaaaaactctacatacagtgacttaccgaatatttcc |
226 |
Q |
| |
|
| |||| | | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26175439 |
agtttcttacggattttcctgatgcatagtttgctgcagaagtacctgcaagtatgttcgcaggaaaaactctacaaacagtgacttaccgaatatttcc |
26175538 |
T |
|
| Q |
227 |
tgcttgacttg |
237 |
Q |
| |
|
||||||||||| |
|
|
| T |
26175539 |
tgcttgacttg |
26175549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 26175596 - 26175707
Alignment:
| Q |
227 |
tgcttgacttgattatttactggtagaggaatcttgtactttatttcattgttgagaataaggtatagatctaccagaggatagttcgtttacacatttt |
326 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26175596 |
tgcttgacttgattatttac-ggtagaggaatcttgtactttatttcattgttgagaataaggtacagatctaccagaggatagttcgtttacacatttt |
26175694 |
T |
|
| Q |
327 |
tattttgattctt |
339 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26175695 |
gattttgattctt |
26175707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 26125543 - 26125654
Alignment:
| Q |
227 |
tgcttgacttgattatttactggtagaggaatcttgtactttatttcattgttgagaataaggtatagatctaccagaggatagttcgtttacacatttt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
26125543 |
tgcttgacttgattatttactggtagaggaatgttgtactttatttcattgttgagaataaggtatagatctatcaga-tatagttcgtttacacatttt |
26125641 |
T |
|
| Q |
327 |
tattttgattctt |
339 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26125642 |
gattttgattctt |
26125654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 36320071 - 36320190
Alignment:
| Q |
74 |
aaataaataaatcaatttccatcggatttacctgcagatagtttttctcttgataaattttcatgcagattttcctgcatagtttgctgcagatatacct |
173 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||| | | || ||||||| |||||||| |||| |||||| ||||||||||| || |||||| |
|
|
| T |
36320071 |
aaatcaatcaatcaatttcccgcggatttacctgcagttttctgtttacttgatatcctttcatgcggattctcctgcgtagtttgctgccgaaatacct |
36320170 |
T |
|
| Q |
174 |
gcaagtatgttcgcaggaaa |
193 |
Q |
| |
|
|||||||| |||||| |||| |
|
|
| T |
36320171 |
gcaagtatattcgcaagaaa |
36320190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University