View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2445_low_22 (Length: 356)

Name: NF2445_low_22
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2445_low_22
NF2445_low_22
[»] chr1 (15 HSPs)
chr1 (49-242)||(52819394-52819587)
chr1 (1-267)||(52819430-52819684)
chr1 (133-251)||(52819598-52819716)
chr1 (55-242)||(52819208-52819383)
chr1 (49-158)||(52819598-52819707)
chr1 (47-158)||(52819272-52819383)
chr1 (133-248)||(52819394-52819509)
chr1 (1-74)||(52819634-52819707)
chr1 (1-74)||(52819310-52819383)
chr1 (132-200)||(52819765-52819833)
chr1 (48-116)||(52819765-52819833)
chr1 (139-200)||(11881466-11881527)
chr1 (55-116)||(11881466-11881527)
chr1 (139-200)||(11890832-11890893)
chr1 (139-200)||(11891096-11891157)
[»] chr6 (1 HSPs)
chr6 (293-327)||(913229-913263)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 49 - 242
Target Start/End: Original strand, 52819394 - 52819587
Alignment:
Q  49 ggtgatggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttatagtagtacgggggtttgtatacaggtgatggtggaggtg 148  Q
    ||||| |||||||||||||| ||||| | ||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||    
T  52819394 ggtgacggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagtacgggggtttgtacacaggtgaaggtggaggtg 52819493  T
Q  149 gtgacttgtagtagtaaactggtgttggaggaggaggtgacttgtagtagtatgggggcttgtatacaggtgatggtggaggaggtgacttgta 242  Q
    | |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| || || |||||||||||||| || || ||||||||    
T  52819494 gagacttgtagtagtaaactggtgatggtggaggaggtgacttgtaatagtatgggggtttatacacaggtgatggtgggggtggagacttgta 52819587  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 52819430 - 52819684
Alignment:
Q  1 ggtgttggaggaggaggtgacttatagtagtacgggggtttgtatacaggtgatggtggaggtggtgacttgtagtagtaaactggtgttggaggaggag 100  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||    
T  52819430 ggtgttggaggaggtggtgaattgtagtagtacgggggtttgtacacaggtgaaggtggaggtggagacttgtagtagtaaactggtgatggtggaggag 52819529  T
Q  101 gtgacttatagtagtacgggggtttgtatacaggtgatggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttgtagtagta 200  Q
    ||||||| || ||||| |||||||| || |||||||||||||| ||||| ||||||||   ||||  ||||| ||| ||||| ||||| |||||          
T  52819530 gtgacttgtaatagtatgggggtttatacacaggtgatggtgggggtggagacttgtacacgtaagttggtgatggtggaggtggtgaattgta------ 52819623  T
Q  201 tgggggcttgtatacaggtgatggtggaggaggtgacttgtaatagtatgggggtttatacacaggt 267  Q
          |||||| |  |||| ||| ||||||||||||||||| |||||||||||||| || ||||||    
T  52819624 ------cttgtaaattggtgttggaggaggaggtgacttgtagtagtatgggggtttgtaaacaggt 52819684  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 52819598 - 52819716
Alignment:
Q  133 ggtgatggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttgtagtagtatgggggcttgtatacaggtgatggtggaggag 232  Q
    |||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |    
T  52819598 ggtgatggtggaggtggtgaattgtacttgtaaattggtgttggaggaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtg 52819697  T
Q  233 gtgacttgtaatagtatgg 251  Q
    ||||||||||||| |||||    
T  52819698 gtgacttgtaataatatgg 52819716  T

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Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 52819208 - 52819383
Alignment:
Q  55 ggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttatagtagtacgggggtttgtatacaggtgatggtggaggtggtgact 154  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||   ||| |            |||||||||| ||||||||||| |    
T  52819208 ggtggaggtggtgacttgtacttgtaaactggtgttggaggaggaggagacttatacacgtaag------------caggtgatggcggaggtggtgaat 52819295  T
Q  155 tgtagtagtaaactggtgttggaggaggaggtgacttgtagtagtatgggggcttgtatacaggtgatggtggaggaggtgacttgta 242  Q
    |||| | |||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||| || |||||||||||    
T  52819296 tgtacttgtaaactggtgttggaggaggaggtgacttgtagtaatagggtggtttgtatacaggtgatggtgggggtggtgacttgta 52819383  T

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Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 52819598 - 52819707
Alignment:
Q  49 ggtgatggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttatagtagtacgggggtttgtatacaggtgatggtggaggtg 148  Q
    |||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||    
T  52819598 ggtgatggtggaggtggtgaattgtacttgtaaattggtgttggaggaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtg 52819697  T
Q  149 gtgacttgta 158  Q
    ||||||||||    
T  52819698 gtgacttgta 52819707  T

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Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 52819272 - 52819383
Alignment:
Q  47 caggtgatggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttatagtagtacgggggtttgtatacaggtgatggtggagg 146  Q
    |||||||||| ||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||| ||    
T  52819272 caggtgatggcggaggtggtgaattgtacttgtaaactggtgttggaggaggaggtgacttgtagtaatagggtggtttgtatacaggtgatggtggggg 52819371  T
Q  147 tggtgacttgta 158  Q
    ||||||||||||    
T  52819372 tggtgacttgta 52819383  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 52819394 - 52819509
Alignment:
Q  133 ggtgatggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttgtagtagtatgggggcttgtatacaggtgatggtggaggag 232  Q
    ||||| |||||||||||||| ||||| | ||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| |||||||| |    
T  52819394 ggtgacggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagtacgggggtttgtacacaggtgaaggtggaggtg 52819493  T
Q  233 gtgacttgtaatagta 248  Q
    | |||||||| |||||    
T  52819494 gagacttgtagtagta 52819509  T

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Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 52819634 - 52819707
Alignment:
Q  1 ggtgttggaggaggaggtgacttatagtagtacgggggtttgtatacaggtgatggtggaggtggtgacttgta 74  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  52819634 ggtgttggaggaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgta 52819707  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 52819310 - 52819383
Alignment:
Q  1 ggtgttggaggaggaggtgacttatagtagtacgggggtttgtatacaggtgatggtggaggtggtgacttgta 74  Q
    ||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||    
T  52819310 ggtgttggaggaggaggtgacttgtagtaatagggtggtttgtatacaggtgatggtgggggtggtgacttgta 52819383  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 52819765 - 52819833
Alignment:
Q  132 aggtgatggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttgtagtagta 200  Q
    |||||||||||||||||||||||||||    ||||| ||||  ||||||||||||||||||||||||||    
T  52819765 aggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgacttgtagtagta 52819833  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 52819765 - 52819833
Alignment:
Q  48 aggtgatggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttatagtagta 116  Q
    |||||||||||||||||||||||||||    ||||| ||||  ||||||||||||||||| ||||||||    
T  52819765 aggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgacttgtagtagta 52819833  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 11881527 - 11881466
Alignment:
Q  139 ggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttgtagtagta 200  Q
    |||||||||||||| ||||| | |||||||||||  ||||| |||||||| |||||||||||    
T  11881527 ggtggaggtggtgagttgtatttgtaaactggtgagggaggtggaggtgatttgtagtagta 11881466  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 11881527 - 11881466
Alignment:
Q  55 ggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttatagtagta 116  Q
    |||||||||||||| ||||| | |||||||||||  ||||| |||||||| || ||||||||    
T  11881527 ggtggaggtggtgagttgtatttgtaaactggtgagggaggtggaggtgatttgtagtagta 11881466  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 11890893 - 11890832
Alignment:
Q  139 ggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttgtagtagta 200  Q
    |||||||||||||| || || | |||||||||||  ||||| |||||||| |||||||||||    
T  11890893 ggtggaggtggtgagttatacttgtaaactggtgagggaggtggaggtgatttgtagtagta 11890832  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 11891157 - 11891096
Alignment:
Q  139 ggtggaggtggtgacttgtagtagtaaactggtgttggaggaggaggtgacttgtagtagta 200  Q
    |||||||||||||| ||||| | |||||| ||||  ||||| |||||||| |||||||||||    
T  11891157 ggtggaggtggtgagttgtacttgtaaaccggtgcgggaggtggaggtgatttgtagtagta 11891096  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 913263 - 913229
Alignment:
Q  293 caagaagaaaggcattgatgatagtatataacaac 327  Q
    |||||||||||||||||||||||||||||||||||    
T  913263 caagaagaaaggcattgatgatagtatataacaac 913229  T

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