View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2445_low_27 (Length: 329)
Name: NF2445_low_27
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 67 - 260
Target Start/End: Complemental strand, 49267214 - 49267021
Alignment:
| Q |
67 |
caccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacag |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49267214 |
caccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaaaatattgtgacag |
49267115 |
T |
|
| Q |
167 |
agtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccaccttctctg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49267114 |
agtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcaccttctctg |
49267021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 70 - 251
Target Start/End: Complemental strand, 49254949 - 49254768
Alignment:
| Q |
70 |
cacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacagagt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49254949 |
cacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagt |
49254850 |
T |
|
| Q |
170 |
gacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaacca |
251 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49254849 |
tacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaacca |
49254768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 49271620 - 49271447
Alignment:
| Q |
67 |
caccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacag |
166 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271620 |
caccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaa |
49271521 |
T |
|
| Q |
167 |
agtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgc |
240 |
Q |
| |
|
||| || |||||||||| ||||||||||| |||||||| |||||||||| ||| |||||||||| ||||| |
|
|
| T |
49271520 |
agttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 49274640 - 49274761
Alignment:
| Q |
83 |
agcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacagagtgacggcgatcata |
182 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
49274640 |
agcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcata |
49274739 |
T |
|
| Q |
183 |
ggcagagctagaaaacaaacat |
204 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
49274740 |
ggcaaagctagaaaaccaacat |
49274761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University