View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2445_low_28 (Length: 325)

Name: NF2445_low_28
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2445_low_28
NF2445_low_28
[»] chr1 (3 HSPs)
chr1 (109-254)||(43292789-43292934)
chr1 (103-197)||(35998153-35998247)
chr1 (103-197)||(9607565-9607659)
[»] chr7 (2 HSPs)
chr7 (103-199)||(27933484-27933580)
chr7 (103-197)||(10201412-10201506)
[»] chr3 (2 HSPs)
chr3 (103-196)||(622048-622141)
chr3 (104-197)||(48847597-48847690)
[»] chr6 (2 HSPs)
chr6 (103-197)||(32312868-32312962)
chr6 (103-197)||(5642617-5642711)
[»] scaffold0095 (1 HSPs)
scaffold0095 (103-143)||(37903-37943)
[»] chr8 (3 HSPs)
chr8 (103-143)||(39396858-39396898)
chr8 (103-199)||(41146195-41146291)
chr8 (102-197)||(11246944-11247039)
[»] scaffold0020 (1 HSPs)
scaffold0020 (103-194)||(155175-155266)
[»] chr4 (1 HSPs)
chr4 (103-143)||(49378838-49378878)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 43292789 - 43292934
Alignment:
Q  109 tagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaacataaatttgtta 208  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||    
T  43292789 tagtatttggagcttctgaaaatcacggtaaaaacatacccgaaaacatgcaaacgtgcttttgtgtggtgcaaacaggaaaccaaacacatatttgtta 43292888  T
Q  209 atacttgagtcaacaatgggacatgggcatatgtttattttcttgg 254  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  43292889 atacttgagtcaacaatgggacatgggcatatgtttattttattgg 43292934  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 35998153 - 35998247
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaaca 197  Q
    ||||| ||||||||||||||||| |||||||||  ||||||  | ||| || |||||||||||||||||||||  ||||||| ||||| ||||||    
T  35998153 agaagttagtatttggagcttctaaaaatcacgacaaaaacgcatcaggaagcatgcaaacgtgcttttgtgtattgcaaacgggaaatcaaaca 35998247  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 9607659 - 9607565
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaaca 197  Q
    ||||| |||||||| |||||||| ||||| |||| |||||||       |||||||||||||||||||||||||  |||||| ||||||||||||    
T  9607659 agaagttagtatttagagcttctaaaaattacggcaaaaacacgttgagaaacatgcaaacgtgcttttgtgtgtcgcaaacgggaaaccaaaca 9607565  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 27933580 - 27933484
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaacata 199  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| | |||||| || ||||||||||||||||| ||||||| ||||| || |||||    
T  27933580 agaagctagtatttagagcttctgaaaatcacggtaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacgggaaatcacacata 27933484  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 10201412 - 10201506
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaaca 197  Q
    ||||||||||||||||||||| || ||||||| | ||||| | | |||||| | |||||||||| ||||||||| ||||||| | ||||||||||    
T  10201412 agaagctagtatttggagcttttggaaatcacagcaaaaatacatcagaaagcgtgcaaacgtgattttgtgtgttgcaaacggaaaaccaaaca 10201506  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 622048 - 622141
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaac 196  Q
    ||||||||||||||||||||| | |||||||||| ||||||  | |  | |||||||||| |||||||||| || ||||||| |||||||||||    
T  622048 agaagctagtatttggagcttttaaaaatcacggcaaaaacgcatcgaataacatgcaaatgtgcttttgtatgttgcaaacaggaaaccaaac 622141  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 48847690 - 48847597
Alignment:
Q  104 gaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaaca 197  Q
    |||| ||||||||| ||||| |||||||||||| |||||   | | |||||| ||||||| ||||||||| || ||||||| | ||||||||||    
T  48847690 gaagttagtatttgaagcttgtgaaaatcacggcaaaaatgcatcggaaaacgtgcaaacatgcttttgtatgttgcaaacggaaaaccaaaca 48847597  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 32312868 - 32312962
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaaca 197  Q
    |||||||||||| |||||||| || ||||||||| ||||||| |   |||| ||||||||| ||||||||| || ||| ||| ||||||||||||    
T  32312868 agaagctagtatctggagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaaca 32312962  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 5642617 - 5642711
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaaca 197  Q
    ||||| ||||||||| | |||||| |||||| |||||||| |||   | |||||||||||  || ||||||||| ||||||| ||||| ||||||    
T  5642617 agaagttagtatttgaaacttctggaaatcatggtaaaaatatattgggaaacatgcaaatttggttttgtgtgttgcaaacgggaaatcaaaca 5642711  T

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Target: scaffold0095 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 37903 - 37943
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaac 143  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  37903 agaagctagtatttggagcttctgaaaatcacggcaaaaac 37943  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 39396898 - 39396858
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaac 143  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  39396898 agaagctagtatttggagcttctgaaaatcacggcaaaaac 39396858  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 41146195 - 41146291
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaacata 199  Q
    |||| |||||||||||||||| ||| |||||||| |||||  || | |||| | |||||   |||||||||||| ||||||| ||||||||||||||    
T  41146195 agaaactagtatttggagcttatgagaatcacggcaaaaatgtatcggaaagcgtgcaagtatgcttttgtgtgttgcaaacgggaaaccaaacata 41146291  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 11247039 - 11246944
Alignment:
Q  102 cagaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaaaca 197  Q
    ||||||||| |||||| ||||||||||||||||| |||||||| |   | || | |||||| ||| ||||||||| ||||||| | ||||||||||    
T  11247039 cagaagctaatatttgaagcttctgaaaatcacgataaaaacacattgggaatcgtgcaaaagtgtttttgtgtgttgcaaacagaaaaccaaaca 11246944  T

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Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 155175 - 155266
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaacataccagaaaacatgcaaacgtgcttttgtgtggtgcaaactggaaaccaa 194  Q
    ||||||||| |||||||||||||||||||||||| ||||||    |||  ||| |||||| ||||||||||||| | ||||| | |||||||    
T  155175 agaagctagcatttggagcttctgaaaatcacggcaaaaacgattcagggaacgtgcaaatgtgcttttgtgtgttacaaacggaaaaccaa 155266  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 49378878 - 49378838
Alignment:
Q  103 agaagctagtatttggagcttctgaaaatcacggtaaaaac 143  Q
    |||||||| ||||| |||||||||||||||| |||||||||    
T  49378878 agaagctaatatttagagcttctgaaaatcaaggtaaaaac 49378838  T

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