View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_3 (Length: 239)
Name: NF2445_low_3
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 4528863 - 4528653
Alignment:
| Q |
11 |
atgaacataaacatgtgtagcaataatggtaatagtagtgcttgtggatgtggtagtggaggaggaggcaatgatcatggtgttaccatgtggagttctg |
110 |
Q |
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| T |
4528863 |
atgaacataaacatgtgtagcaataatggtagtagtagtgcttgtggatgtggtagtggaggaggaggcaatgatcatggtgttaccatgtggagttctg |
4528764 |
T |
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| Q |
111 |
gtctgaagaaacaacaacagcagcaacaaaaacgtccgaggattccgaaaagaggtcccggtgttgcagaacttgagaagatcttgagagaacaagaatc |
210 |
Q |
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| T |
4528763 |
gtctgaagaaacaacaacagcagcaacaaaaacgtccgaggattccgaaaagaggtcccggtgttgcagaacttgagaagatcttgagagaacaagaatc |
4528664 |
T |
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| Q |
211 |
tactgacataa |
221 |
Q |
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| T |
4528663 |
tactgacataa |
4528653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 16995077 - 16994957
Alignment:
| Q |
87 |
atggtgttaccatgtggagttctggtctgaagaaacaacaacagcagcaacaaaaacgtccgaggattccgaaaagaggtcccggtgttgcagaacttga |
186 |
Q |
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| T |
16995077 |
atggtgataccatgtgcagttctggtttgaaaaaacaacatcaggaacaacaaaaacgtcctagggttccgaaaagaggtcccggtattgctgaacttga |
16994978 |
T |
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| Q |
187 |
gaagatcttgagagaacaaga |
207 |
Q |
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| T |
16994977 |
gaagctcttgagagaaaaaga |
16994957 |
T |
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