View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_36 (Length: 292)
Name: NF2445_low_36
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 1330358 - 1330078
Alignment:
| Q |
1 |
tcttggaggtgggtgttggatagaactaaagtgtcggcatgtttattctatgaatggtgttggaacccaaaaggatgccttacctgataattggagtttt |
100 |
Q |
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| T |
1330358 |
tcttggagttgggtgttggatagaactaaagtgtcggcatgtttattctatgaatggtgttggaacccaaaaggatgccttacctgataattggagtttt |
1330259 |
T |
|
| Q |
101 |
ttctcgagtttctgtgtatattgacagcgctgttgctggtgtgtgtcgtggaggagttttttgtgagtcggtgggtgctgtcagctcctactgctggnnn |
200 |
Q |
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| T |
1330258 |
ttctcgagtttctgtgtatattgacagcgctgttgctggtgtgtgtcgtggaggagatttttgtgggtcggtgggtgctttcagctcctactgctggttt |
1330159 |
T |
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| Q |
201 |
nnnnngactgttttgcttatgattctagggagagttgctgttattag-tgcttctgttttcagagctgggggtagggtctg |
280 |
Q |
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| T |
1330158 |
ttttttactgttttgcttatgcttctagggagagttgctgttattagttgcttctgttttcagagctgggggtagggtctg |
1330078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 29083197 - 29083229
Alignment:
| Q |
49 |
tatgaatggtgttggaacccaaaaggatgcctt |
81 |
Q |
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| T |
29083197 |
tatgaatggtgttggaacccaaaagaatgcctt |
29083229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 14247570 - 14247292
Alignment:
| Q |
1 |
tcttggaggtgggtgttggatagaactaaagtgtcggcatgtttattctatgaatggtgttggaacccaaaaggatgccttacctgataattggagtttt |
100 |
Q |
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| T |
14247570 |
tcttggaggtgggtgttggatagaactaaagtgccaacgtgtttgttctatgaatggtgttggaacccaaaagaatgccttatgcgataagtggaggttt |
14247471 |
T |
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| Q |
101 |
ttc-tcgagtttctgtgtatattgacagcgctgttgctggtgtgtgtcgtggaggagttttttgtgagtcggtgggtgctgtcagctcctactgctggnn |
199 |
Q |
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| T |
14247470 |
ttcctcgagtttcagtgaatattgacagcgctgttgctggtgtgtgtcatggaggagttttatgtgggtccgtgggtgctgtcagctcctactgctgg-- |
14247373 |
T |
|
| Q |
200 |
nnnnnngactgttttgcttatgattctagggagagttgctgttattagtgcttctgttttcagagctgggggtagggtctg |
280 |
Q |
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| T |
14247372 |
tcttttgactgttttgcttatgcttccagcgagagtttctgtcattattgcttctgttttcagagctgggggcagggtctg |
14247292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 47 - 284
Target Start/End: Complemental strand, 9850424 - 9850183
Alignment:
| Q |
47 |
tctatgaatggtgttggaacccaaaaggatgccttacctgataattggagttttttc-tcgagtttctgtgtatattgacagcgctgttgctggtgtgtg |
145 |
Q |
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| T |
9850424 |
tctatgaatggtgttggaacccaaaagaatgccttatgcgataagtggagttttttcctcgagtttcagtgaatattgatagcgctattgctgttacatg |
9850325 |
T |
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| Q |
146 |
tcgtggaggagttttttgtgagtcggtgggtgctgtcagctcctactgctg---gnnnnnnnngactgttttgcttatgattctagggagagttgctgtt |
242 |
Q |
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|||||||||||||| |||| || ||||||||||||||||||||||||||| | |||||| |||||| |||||||||||||||||| |
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| T |
9850324 |
ccgtggaggagttttctgtgggttggtgggtgctgtcagctcctactgctgtttttattttaatattgttttacttatgcttctagggagagttgctgcc |
9850225 |
T |
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| Q |
243 |
attagtgcttctgttttcagagctgggggtagggtctgtggt |
284 |
Q |
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| T |
9850224 |
ataagtgattctattttcagagctgggggtggggtctgtggt |
9850183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 7701561 - 7701528
Alignment:
| Q |
40 |
tgtttattctatgaatggtgttggaacccaaaag |
73 |
Q |
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| T |
7701561 |
tgtttattctatgaatgatgttggaacccaaaag |
7701528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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