View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2445_low_37 (Length: 285)

Name: NF2445_low_37
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2445_low_37
NF2445_low_37
[»] chr4 (12 HSPs)
chr4 (13-254)||(25643630-25643871)
chr4 (30-256)||(20317494-20317713)
chr4 (16-126)||(22218304-22218414)
chr4 (16-129)||(22345318-22345430)
chr4 (162-233)||(11521043-11521114)
chr4 (13-135)||(48641023-48641146)
chr4 (16-122)||(10107305-10107411)
chr4 (42-185)||(7611466-7611604)
chr4 (146-213)||(10107224-10107292)
chr4 (162-233)||(9737359-9737430)
chr4 (162-233)||(19900757-19900828)
chr4 (93-121)||(12286320-12286348)
[»] chr1 (8 HSPs)
chr1 (14-252)||(24306651-24306883)
chr1 (18-233)||(17017423-17017634)
chr1 (146-233)||(33712857-33712944)
chr1 (16-72)||(10064297-10064353)
chr1 (147-185)||(15053071-15053109)
chr1 (161-233)||(24267630-24267702)
chr1 (15-113)||(13134853-13134951)
chr1 (16-72)||(15053173-15053229)
[»] chr3 (5 HSPs)
chr3 (19-252)||(27542617-27542844)
chr3 (146-252)||(25756834-25756939)
chr3 (166-256)||(21083428-21083519)
chr3 (135-185)||(20339619-20339669)
chr3 (89-117)||(21083560-21083588)
[»] chr8 (6 HSPs)
chr8 (21-233)||(26008232-26008439)
chr8 (24-171)||(14006348-14006489)
chr8 (146-234)||(17972353-17972441)
chr8 (16-121)||(24119473-24119578)
chr8 (146-233)||(12268948-12269035)
chr8 (15-122)||(17972454-17972561)
[»] chr2 (11 HSPs)
chr2 (17-233)||(25937112-25937322)
chr2 (36-254)||(12557417-12557629)
chr2 (15-129)||(18539664-18539778)
chr2 (85-257)||(25070291-25070456)
chr2 (16-234)||(18932408-18932611)
chr2 (149-252)||(29883412-29883515)
chr2 (146-256)||(8446879-8446989)
chr2 (158-233)||(27869876-27869951)
chr2 (146-201)||(30695274-30695329)
chr2 (162-233)||(45621731-45621802)
chr2 (16-72)||(30695189-30695245)
[»] chr5 (10 HSPs)
chr5 (16-166)||(28278699-28278843)
chr5 (15-185)||(25922553-25922718)
chr5 (166-256)||(32417200-32417291)
chr5 (65-120)||(18223299-18223354)
chr5 (18-119)||(15544332-15544434)
chr5 (16-114)||(20533756-20533854)
chr5 (173-254)||(27921254-27921336)
chr5 (15-72)||(17337558-17337615)
chr5 (16-72)||(28253619-28253675)
chr5 (173-243)||(15470107-15470177)
[»] chr7 (18 HSPs)
chr7 (13-194)||(2504394-2504569)
chr7 (14-185)||(4258600-4258765)
chr7 (13-114)||(2454041-2454142)
chr7 (173-252)||(21227348-21227428)
chr7 (147-233)||(2953763-2953847)
chr7 (167-256)||(19398665-19398755)
chr7 (18-119)||(21884872-21884973)
chr7 (43-185)||(8937976-8938113)
chr7 (173-252)||(23587790-23587870)
chr7 (161-252)||(9890344-9890435)
chr7 (148-234)||(9062981-9063067)
chr7 (21-114)||(9916813-9916906)
chr7 (21-114)||(9924725-9924818)
chr7 (18-119)||(21912196-21912297)
chr7 (146-217)||(2453950-2454021)
chr7 (21-119)||(13707766-13707865)
chr7 (162-217)||(16223989-16224044)
chr7 (166-234)||(21102126-21102194)
[»] chr6 (9 HSPs)
chr6 (158-256)||(33655719-33655817)
chr6 (146-234)||(9386242-9386330)
chr6 (16-113)||(24187941-24188038)
chr6 (13-130)||(34478810-34478923)
chr6 (147-192)||(20404510-20404555)
chr6 (34-114)||(21547206-21547286)
chr6 (18-120)||(28585745-28585847)
chr6 (16-85)||(15613866-15613935)
chr6 (18-119)||(23088053-23088153)
[»] scaffold0085 (2 HSPs)
scaffold0085 (146-234)||(22407-22495)
scaffold0085 (16-126)||(22504-22614)
[»] scaffold1017 (1 HSPs)
scaffold1017 (16-218)||(2825-3016)
[»] scaffold0394 (1 HSPs)
scaffold0394 (167-223)||(13763-13818)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 25643871 - 25643630
Alignment:
Q  13 cagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcact 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25643871 cagacctctgagagagtaaggccccatacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcact 25643772  T
Q  113 taaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccacc 212  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  25643771 taaatagaagtcgtaaaaataaaatcaatatctgaataatgtttgacaattaattaattccaacaaatgaatataggggactcgaagaaccctaaccact 25643672  T
Q  213 gctaatattctgcaataaaaaatggttacttctaaactctcg 254  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  25643671 gctaatattctgcaataaaaaatggtttcttataaactctcg 25643630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 20317494 - 20317713
Alignment:
Q  30 aaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaa 129  Q
    ||||||||||||||||||||  ||||||| |||  ||||||||  ||||||  ||| |||||||||||||| ||||||||| ||| ||| ||| ||||||    
T  20317494 aaggccccacacgtacaaacttgtgtgatcagtttgtgcaacttgacagctggtaggaaataaaaccccacgaactcatcaattagatataagacgtaaa 20317593  T
Q  130 aataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaat- 228  Q
    |  ||        || ||||||||||||| |||||||||||| || |||||| |||||||||||| |||||| | ||||   | |||||||||||||||     
T  20317594 atgaa--------tctgaataatgcttgatcattaattaattccagcaaatggatataggggacttgaagaatcttaactgacactaatattctgcaatc 20317685  T
Q  229 aaaaaatggttacttctaaactctcgct 256  Q
    |||||| | ||||| |||||||||||||    
T  20317686 aaaaaaggtttactcctaaactctcgct 20317713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 22218304 - 22218414
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaa 115  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||  |  ||| |||||||||| ||  |||||||||||||     
T  22218304 acctttgagagagtaaggctccacacgtacaaacccgtgtgatcagtaggtgcaagttaacaattggtaggaaataaaaccacatgaactcatcacttag 22218403  T
Q  116 atagaagtcgt 126  Q
    |||||| ||||    
T  22218404 atagaactcgt 22218414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 22345430 - 22345318
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaa 115  Q
    |||| ||||| ||||||||||||||| |||||||   |||||| || ||||||||||||| ||||  ||  ||||||||| |||  ||||||||||||||    
T  22345430 acctttgagaaagtaaggccccacac-tacaaacgaatgtgatcagcaggtgcaactcaatagctggtaagaaataaaactccatgaactcatcacttaa 22345332  T
Q  116 atagaagtcgtaaa 129  Q
    ||||||| ||||||    
T  22345331 atagaagacgtaaa 22345318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 11521043 - 11521114
Alignment:
Q  162 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 233  Q
    |||||||||||||||||||||||| |||  | || ||||| ||||||||||||||| |||||||||| ||||    
T  11521043 ttaattaatttcaacaaatgaatagaggatattcaaagaatcctaaccaccgctaacattctgcaatcaaaa 11521114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 48641146 - 48641023
Alignment:
Q  13 cagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcac 111  Q
    ||||||||||||||||||| |||||| |||||||||   ||||||| |||||||| ||||| ||  ||  || || ||||||||||||| ||||||||||    
T  48641146 cagacctctgagagagtaaagccccaaacgtacaaaattgtgtgatcagtaggtgtaactcgacgactggtaggataataaaaccccacgaactcatcac 48641047  T
Q  112 ttaaatagaagtcgtaaaaataaa 135  Q
    ||| ||| |||  |||||| ||||    
T  48641046 ttagataaaagatgtaaaattaaa 48641023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 10107411 - 10107305
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaa 115  Q
    |||||| |||||||||| ||| | ||||||||||| ||||||| |||||||||||||  | |||   |||  | ||||||||||| |||||||||||||     
T  10107411 acctctaagagagtaagaccctaaacgtacaaacctgtgtgattagtaggtgcaacttgatagcctgtaggtagtaaaaccccacgaactcatcacttag 10107312  T
Q  116 atagaag 122  Q
    |||||||    
T  10107311 atagaag 10107305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 7611604 - 7611466
Alignment:
Q  42 gtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaa 140  Q
    |||||||| |||||||| |||||||||||||| ||||||  || || ||||||||||||| ||||||||||||  || | ||      | ||  ||||||    
T  7611604 gtacaaactcgtgtgatcagtaggtgcaactcgacagctggtaggataataaaaccccacgaactcatcacttttatgggag------acatttaaccaa 7611511  T
Q  141 tatcagaataatgcttgaccattaattaatttcaacaaatgaata 185  Q
    |  | ||||||| |||||||||||||||||| |||||||||||||    
T  7611510 tccctgaataatacttgaccattaattaattccaacaaatgaata 7611466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 10107292 - 10107224
Alignment:
Q  146 gaataatgcttgaccatt-aattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccg 213  Q
    |||| ||||||||| ||| |||||||| ||||||||||||| |||||| |||||||| | |||||||||    
T  10107292 gaatgatgcttgacaatttaattaattccaacaaatgaatagaggggattcgaagaatcataaccaccg 10107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 9737359 - 9737430
Alignment:
Q  162 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 233  Q
    |||||||||| ||||||||||||| |||  | || ||||| ||||||| ||||||| |||||||||| ||||    
T  9737359 ttaattaattccaacaaatgaatagaggacattcaaagaatcctaaccgccgctaacattctgcaatcaaaa 9737430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 19900828 - 19900757
Alignment:
Q  162 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 233  Q
    |||| ||||| |||||||| |||||||||||  ||||||| ||||||| ||||||| ||| |||||| ||||    
T  19900828 ttaagtaattccaacaaataaatataggggatccgaagaatcctaacctccgctaacattatgcaatcaaaa 19900757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 12286348 - 12286320
Alignment:
Q  93 aaccccacaaactcatcacttaaatagaa 121  Q
    |||||||||||||||||||||||||||||    
T  12286348 aaccccacaaactcatcacttaaatagaa 12286320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 24306651 - 24306883
Alignment:
Q  14 agacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactt 113  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || |||| |||||||||||||| ||||||||||||    
T  24306651 agacctccgagagagtaaggccccacacgtacaaatccgtgtgattagtaggtgcaactcaacaactgataggaaataaaaccccacgaactcatcactt 24306750  T
Q  114 aaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccg 213  Q
    ||| | |||||      |||||||||||||  |||||||| |||| ||||||||||||||||||||| ||||||||||| || ||||| |||||||  ||    
T  24306751 aaacataagtc------ataaaaccaatatttgaataatgtttgatcattaattaatttcaacaaattaatataggggattcaaagaatcctaaccgtcg 24306844  T
Q  214 ctaatattctgcaataaaaaatggttacttctaaactct 252  Q
    |||| ||| | |||| ||||  |||||||||||||||||    
T  24306845 ctaacatttttcaatcaaaacaggttacttctaaactct 24306883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 17017423 - 17017634
Alignment:
Q  18 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 117  Q
    |||||||||| |||| ||||| ||||||||||||||||||| |||||  ||||||| || |||  ||| |||||||||||||| ||||| ||||||||||    
T  17017423 ctctgagagattaagtccccatacgtacaaacccgtgtgattagtagccgcaactcgactgctggtaggaaataaaaccccacgaactcgtcacttaaat 17017522  T
Q  118 agaagtcgtaaaaataaaaccaatatcagaataatgcttgaccatt--aattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgct 215  Q
    ||||| ||      ||||| ||||||| ||| |||||||||| |||   ||||| | |||||||| |||| |||||| |||||||||||| ||  || ||    
T  17017523 agaaggcg------taaaatcaatatctgaacaatgcttgactattgatattaaatccaacaaataaatagaggggattcgaagaacccttactgccact 17017616  T
Q  216 aatattctgcaataaaaa 233  Q
    || |||||||||| ||||    
T  17017617 aacattctgcaatcaaaa 17017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 33712944 - 33712857
Alignment:
Q  146 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 233  Q
    ||||||| ||||||||||||||| || ||| | ||||||| |||||| || |||||||||||||| |||||| |||||||||| ||||    
T  33712944 gaataatacttgaccattaattatttccaatagatgaatagaggggattcaaagaaccctaaccatcgctaacattctgcaatcaaaa 33712857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 10064297 - 10064353
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 72  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||    
T  10064297 acctctgagagagcaagaccccacacgtacaaacccgtgtgatcagtaggtgtaact 10064353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 15053109 - 15053071
Alignment:
Q  147 aataatgcttgaccattaattaatttcaacaaatgaata 185  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15053109 aataatgcttgaccattaattaatttcaacaaatgaata 15053071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 24267630 - 24267702
Alignment:
Q  161 attaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 233  Q
    ||||||||||| |||||||| |||| |||||| || ||||| |||||||  |||||| |||||||||| ||||    
T  24267630 attaattaattccaacaaattaatagaggggattcaaagaatcctaaccgtcgctaacattctgcaatcaaaa 24267702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 13134853 - 13134951
Alignment:
Q  15 gacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcactt 113  Q
    ||||||| |||||||||| |||| ||||||||||||| |||||| ||||| | |||||  ||||||  || || ||||||||| ||| ||||||||||||    
T  13134853 gacctctaagagagtaagtcccc-cacgtacaaacccatgtgatcagtagattcaacttgacagctggtaggataataaaaccgcacgaactcatcactt 13134951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 15053229 - 15053173
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 72  Q
    ||||||||||||||||| | | |||||||||||||| |||||| | ||| |||||||    
T  15053229 acctctgagagagtaagactctacacgtacaaacccatgtgatcaatagttgcaact 15053173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 27542617 - 27542844
Alignment:
Q  19 tctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaata 118  Q
    ||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||| || | ||  | | ||||||||| | ||||||||||||||||||||    
T  27542617 tctgagagattaaggccccacacatacaaacctgtgtgattagtaggtgcaactaaagaactggttggaaataaaactctacaaactcatcacttaaata 27542716  T
Q  119 gaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaat 218  Q
    |||| |      |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| | |||| ||||||||  |||||||||| |||     
T  27542717 gaagac------ataaaaccaatatctgaataatgtttgaccattaattaattccaacaaatgaatagatgggattcgaagaattctaaccaccgttaac 27542810  T
Q  219 attctgcaataaaaaatggttacttctaaactct 252  Q
     ||||| ||| ||||  |||||||||||||||||    
T  27542811 tttctgtaatcaaaacaggttacttctaaactct 27542844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 25756939 - 25756834
Alignment:
Q  146 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttct 245  Q
    |||||||| ||||||||||||||||| |||||||| |||| || ||| |||||| | ||||||||||||||| ||| |||||| ||||  || |||| ||    
T  25756939 gaataatgtttgaccattaattaattccaacaaataaatagagaggattcgaag-atcctaaccaccgctaacattttgcaatcaaaacaggctactcct 25756841  T
Q  246 aaactct 252  Q
    |||||||    
T  25756840 aaactct 25756834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 21083519 - 21083428
Alignment:
Q  166 ttaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa-atggttacttctaaactctcgct 256  Q
    |||||||||||||||||||| |||  | ||||||||  |||||| ||  |||  ||||||||||||||   |||||||||||||||||||||    
T  21083519 ttaatttcaacaaatgaatagaggatattcgaagaattctaaccgcctgtaacgttctgcaataaaaatcaggttacttctaaactctcgct 21083428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 20339619 - 20339669
Alignment:
Q  135 aaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaata 185  Q
    |||||||| |||||||||||||||  |||| |||||| |||||||||||||    
T  20339619 aaccaataccagaataatgcttgattattatttaattccaacaaatgaata 20339669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 21083588 - 21083560
Alignment:
Q  89 ataaaaccccacaaactcatcacttaaat 117  Q
    |||||||||||||||||||||||||||||    
T  21083588 ataaaaccccacaaactcatcacttaaat 21083560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 26008439 - 26008232
Alignment:
Q  21 tgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaataga 120  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||| ||| ||||    ||| ||||||||| ||| ||||||||||||||||||||    
T  26008439 tgagagagtaaggccccacacgtacaaactcgtatgatcagtaggtgcagctcgacagacggtaggaaataaaactccataaactcatcacttaaataga 26008340  T
Q  121 agtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatat 220  Q
    |  |||||||||     ||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| || || || | ||||||  ||||| ||    
T  26008339 aaacgtaaaaat-----caatatcggaataatgtttgaccattaattaatttcaacaaatgaatagaggggattcaaaaaatcttaaccattgctaacat 26008245  T
Q  221 tctgcaataaaaa 233  Q
    ||| |||| ||||    
T  26008244 tctacaatcaaaa 26008232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 14006489 - 14006348
Alignment:
Q  24 gagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagt 123  Q
    |||||||||||| ||||||||||||   |||| || | |||||||||  ||||||||  ||| |||||||||||||| || | |||||||| |||||||     
T  14006489 gagagtaaggcctcacacgtacaaatatgtgttattaataggtgcaatccaacagctggtaggaaataaaaccccacgaaattatcacttatatagaaga 14006390  T
Q  124 cgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatt 171  Q
    ||      ||||| ||||||| ||||||||||||| ||||||||||||    
T  14006389 cg------taaaatcaatatccgaataatgcttgatcattaattaatt 14006348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 17972441 - 17972353
Alignment:
Q  146 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa 234  Q
    |||||||| |||||||||||||| || ||||||||||||| |||||| |||||||| ||| ||| ||||||| | | ||||||||||||    
T  17972441 gaataatgtttgaccattaattagttccaacaaatgaataaaggggattcgaagaatccttaccgccgctaaaactttgcaataaaaaa 17972353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 24119473 - 24119578
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaa 115  Q
    |||| |||||||||||| ||||||||||||| ||| ||||||| || ||||||||||  ||||||  ||   | |||||||| |  |||||||||||||     
T  24119473 acctttgagagagtaagaccccacacgtacatacctgtgtgattagcaggtgcaacttgacagctattaagtagtaaaacccgatgaactcatcacttag 24119572  T
Q  116 atagaa 121  Q
    ||||||    
T  24119573 atagaa 24119578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 12269035 - 12268948
Alignment:
Q  146 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 233  Q
    |||||||| ||||||||||| |||||  ||||||| |||| |||||| | |||||| ||||||  ||||||| ||||| |||| ||||    
T  12269035 gaataatgtttgaccattaactaattctaacaaataaatagaggggatttgaagaatcctaactgccgctaacattctacaatcaaaa 12268948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 17972561 - 17972454
Alignment:
Q  15 gacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 114  Q
    |||||||||||||||||   |||||| ||| || | ||||||||||||||||||||||  ||||||  ||   | ||||||| ||| |||||||||||||    
T  17972561 gacctctgagagagtaaaatcccacatgtaaaatctcgtgtgataagtaggtgcaacttgacagctggtaagcagtaaaacctcacgaactcatcactta 17972462  T
Q  115 aatagaag 122  Q
     ||| |||    
T  17972461 gatataag 17972454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 25937322 - 25937112
Alignment:
Q  17 cctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaa 116  Q
    ||||| |||||||||||||||||||| |||||  |||||||| |||||||||||||| | || |  ||  |||||||| |||||||||||||||||||||    
T  25937322 cctctaagagagtaaggccccacacgaacaaaaacgtgtgattagtaggtgcaactcgatagttggtaagaaataaaatcccacaaactcatcacttaaa 25937223  T
Q  117 tagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgcta 216  Q
    || ||| ||      ||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||| | |||| |||| ||| ||||||| |||| |    
T  25937222 taaaagacg------taaaatcaacatctgaataatgcttgaccattaattaattccaacaaatgaataaaagggattcgaggaatcctaaccgccgcaa 25937129  T
Q  217 atattctgcaataaaaa 233  Q
    | |||||||||| ||||    
T  25937128 acattctgcaatcaaaa 25937112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 36 - 254
Target Start/End: Original strand, 12557417 - 12557629
Alignment:
Q  36 ccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaa 135  Q
    ||||||||||||||  ||||||| |||||||||||| ||||| ||  || |||||| ||||||||||||||||||||||||||||||      | || ||    
T  12557417 ccacacgtacaaacatgtgtgattagtaggtgcaacgcaacaactggtataaaatataaccccacaaactcatcacttaaatagaag------acatcaa 12557510  T
Q  136 accaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat 235  Q
    ||||||||| || ||||| ||||||||||||||||| ||||||||||| | |||||   ||||||| |||| |  | ||||| |||||||||| ||||      
T  12557511 accaatatctgactaatgtttgaccattaattaattccaacaaatgaacaaaggggctccgaagaatcctagctgctgctaacattctgcaatcaaaaca 12557610  T
Q  236 ggttacttctaaactctcg 254  Q
    | |||||||||||||||||    
T  12557611 gattacttctaaactctcg 12557629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 18539664 - 18539778
Alignment:
Q  15 gacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 114  Q
    |||||||||||||||||||| ||||| |||||||||| |||||| | |||||| ||||||| |  |  ||| ||||||||||| |  |||||||||| ||    
T  18539664 gacctctgagagagtaaggcaccacatgtacaaacccatgtgatcactaggtgaaactcaagaaatgctaggaaataaaaccctaggaactcatcacgta 18539763  T
Q  115 aatagaagtcgtaaa 129  Q
    |||| ||| ||||||    
T  18539764 aataaaagacgtaaa 18539778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 257
Target Start/End: Complemental strand, 25070456 - 25070291
Alignment:
Q  85 gaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaat 184  Q
    |||||||||||||||| ||||||||||||||||||||| |      |||||   |||||  ||||||||||||||||  ||||||||  |||||||||||    
T  25070456 gaaaataaaaccccacgaactcatcacttaaatagaaggc------ataaactaaatatttgaataatgcttgacca-aaattaattctaacaaatgaat 25070364  T
Q  185 ataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctt 257  Q
    | |||| | |||||||| | ||||| ||||||| ||  |||||| ||||   |||||||| ||| ||||||||    
T  25070363 agagggaattcgaagaatcataaccgccgctaacatcttgcaatcaaaacatgttacttccaaattctcgctt 25070291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 18932611 - 18932408
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaa 115  Q
    |||| |||||||||||| |||||||| ||||||||| |||||| |||| ||||| ||  ||||||  |||  | ||||||||||| |||||||| ||||     
T  18932611 acctttgagagagtaagaccccacacctacaaacccatgtgatcagtatgtgcagctttacagctggtaggcagtaaaaccccacgaactcatcccttag 18932512  T
Q  116 atagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgct 215  Q
    | ||||| | ||| |           | | ||||||||||||| |||||||||||| ||||||||||||| ||| || |||||    |||||| ||| ||    
T  18932511 agagaagacataaga-----------aactgaataatgcttgaacattaattaattccaacaaatgaataaaggagattcgaa----cctaactaccact 18932427  T
Q  216 aatattctgcaataaaaaa 234  Q
    || ||||||||||||||||    
T  18932426 aacattctgcaataaaaaa 18932408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 29883515 - 29883412
Alignment:
Q  149 taatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaa 248  Q
    ||||| ||||||||||||||||| ||||||||||||| | | || |||||||| ||||||| ||  ||| ||| |||||| ||||  ||||||| |||||    
T  29883515 taatgtttgaccattaattaattccaacaaatgaatagatgagattcgaagaatcctaaccgccattaacattttgcaatcaaaacaggttactcctaaa 29883416  T
Q  249 ctct 252  Q
    ||||    
T  29883415 ctct 29883412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 8446879 - 8446989
Alignment:
Q  146 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttct 245  Q
    |||||||| |||||||||| |||||| ||||||||||||| |||||| || || || ||||||| || |||  ||||| |||| || |  ||||||||||    
T  8446879 gaataatgattgaccattatttaattccaacaaatgaatagaggggattcaaataatcctaaccgcctctatcattctacaatcaacataggttacttct 8446978  T
Q  246 aaactctcgct 256  Q
    |||||| ||||    
T  8446979 aaactcccgct 8446989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 27869951 - 27869876
Alignment:
Q  158 accattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 233  Q
    ||||||||||| ||||||||||| |||| |||||| || |||||  |||||| ||||||| |||||||||| ||||    
T  27869951 accattaattactttcaacaaattaatagaggggattcaaagaattctaaccgccgctaacattctgcaatcaaaa 27869876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 30695274 - 30695329
Alignment:
Q  146 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaa 201  Q
    |||||||||||||||||||| ||||| ||||||||||| | ||| |||||||||||    
T  30695274 gaataatgcttgaccattaactaattccaacaaatgaaaagaggagactcgaagaa 30695329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 45621731 - 45621802
Alignment:
Q  162 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 233  Q
    |||||||||| ||||||||||||| |||||| || ||||| | ||||| ||||||| |||||||||| ||||    
T  45621731 ttaattaattccaacaaatgaatagaggggattcaaagaatcttaaccgccgctaacattctgcaatcaaaa 45621802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 30695189 - 30695245
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 72  Q
    |||| |||||||||||  ||||| ||| |||||| |||||||| |||||||||||||    
T  30695189 acctttgagagagtaataccccagacgaacaaactcgtgtgatcagtaggtgcaact 30695245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 28278843 - 28278699
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaa 115  Q
    |||| ||||||||||||| ||||||||||||||| ||||| || |||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||    
T  28278843 acctatgagagagtaaggtcccacacgtacaaactcgtgttatcagtaggtgcaactcgacaactgatagaaaataaaagcccacaaactcatcacttaa 28278744  T
Q  116 atagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaat 166  Q
    |||||||      |  ||||| ||||||| |||||||| ||||||||||||    
T  28278743 atagaag------atgtaaaatcaatatctgaataatgtttgaccattaat 28278699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 25922553 - 25922718
Alignment:
Q  15 gacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatag-aaaataaaaccccacaaactcatcactt 113  Q
    ||||| ||||||||||||||| |||||   ||||||  || ||| |||||||||||||  |||||   ||| |||||||||| |||||||||||||||||    
T  25922553 gacctatgagagagtaaggcctcacacacgcaaaccaatgcgatcagtaggtgcaacttgacagcatgtaggaaaataaaactccacaaactcatcactt 25922652  T
Q  114 aaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaata 185  Q
    |||||||      | | ||  |||||||||| |||||||| ||||||||||||||||| | |||||||||||    
T  25922653 aaataga------atacatttaaccaatatctgaataatgtttgaccattaattaattccgacaaatgaata 25922718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 32417200 - 32417291
Alignment:
Q  166 ttaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcgct 256  Q
    |||||| |||||| | |||| |||||| |||||||| |||||||||| |||| |||||| |||||||||| |||||||||||||||| ||||    
T  32417200 ttaattccaacaagtaaatagaggggattcgaagaatcctaaccaccactaacattctgaaataaaaaataggttacttctaaactcacgct 32417291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 18223354 - 18223299
Alignment:
Q  65 gtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaataga 120  Q
    |||||||||||||||| ||||  | |||||||||||||||||||||||||||||||    
T  18223354 gtgcaactcaacagctaataggtagtaaaaccccacaaactcatcacttaaataga 18223299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 15544434 - 15544332
Alignment:
Q  18 ctctgagagagtaaggcccc-acacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaa 116  Q
    ||||||||||||||| |||| ||||||||  ||||||||||| |||||||||| ||| ||| ||  |||  | ||||||||||| |||| ||||||||||    
T  15544434 ctctgagagagtaagacccccacacgtacctacccgtgtgatcagtaggtgcagctcgacaactgctaggtagtaaaaccccacgaacttatcacttaaa 15544335  T
Q  117 tag 119  Q
    |||    
T  15544334 tag 15544332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 20533756 - 20533854
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 114  Q
    ||||| ||||||||||||||||||||||| |||| | ||||||  ||||||||||||||||| ||   ||  ||||||||| |||| | ||||||||||    
T  20533756 acctccgagagagtaaggccccacacgtataaactcatgtgatttgtaggtgcaactcaacaactgtaaggtaataaaacctcacatagtcatcactta 20533854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 27921254 - 27921336
Alignment:
Q  173 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcg 254  Q
    |||||||| |||| |||||| |||||||| ||||||| | ||||| |||||||||| ||||   |||||||||||||||||||    
T  27921254 caacaaataaataaaggggattcgaagaatcctaacctctgctaacattctgcaatcaaaaccaggttacttctaaactctcg 27921336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 17337558 - 17337615
Alignment:
Q  15 gacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 72  Q
    ||||||||||||||| | ||||||||||||||||| ||||| || ||||| |||||||    
T  17337558 gacctctgagagagtcaagccccacacgtacaaactcgtgtcatcagtagatgcaact 17337615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28253675 - 28253619
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 72  Q
    |||| |||||||||||| ||||||| ||||| ||||||||||| || ||||||||||    
T  28253675 acctttgagagagtaagaccccacatgtacatacccgtgtgatcagcaggtgcaact 28253619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 15470177 - 15470107
Alignment:
Q  173 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttactt 243  Q
    |||||||| |||| |||||| || ||||| ||||||| ||||||||||| |||||| |||| |||| ||||    
T  15470177 caacaaataaatagaggggattcaaagaatcctaaccgccgctaatattttgcaatcaaaattggtaactt 15470107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 2504569 - 2504394
Alignment:
Q  13 cagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcact 112  Q
    |||||||||||||| ||||| || |||||||||||| | |||||||||||||||| ||||| | |||   ||| ||||||||||||| |||||| |||||    
T  2504569 cagacctctgagagcgtaagacctcacacgtacaaatctgtgtgataagtaggtgtaactcgatagcaggtaggaaataaaaccccaaaaactcttcact 2504470  T
Q  113 taaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggact 194  Q
    |||||||||| ||      |||||| |||||  |||||||||||||||||||||||||| |||||| |||||| || |||||    
T  2504469 taaatagaagacg------taaaacaaatatatgaataatgcttgaccattaattaattccaacaagtgaatagagaggact 2504394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 4258600 - 4258765
Alignment:
Q  14 agacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactt 113  Q
    ||||||| ||||||||||||| |||||  |||||||  ||||||| |||||||  ||||| || ||| |||| |||||||||||||  ||||||||||||    
T  4258600 agacctccgagagagtaaggctccacaaatacaaacttgtgtgatcagtaggtttaactctactgctgataggaaataaaaccccatgaactcatcactt 4258699  T
Q  114 aaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaata 185  Q
    ||| | ||| ||      ||||||||||||  |||||||||||| ||||||| |||||  ||||||||||||    
T  4258700 aaacataagacg------taaaaccaatatttgaataatgcttgtccattaactaattcaaacaaatgaata 4258765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 2454142 - 2454041
Alignment:
Q  13 cagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcact 112  Q
    ||||||||| |||||||||||  ||| || |||||||||||||||| |||||||| ||||  | || | ||||  | |||||||||||||||||||||||    
T  2454142 cagacctcttagagagtaaggttccagacatacaaacccgtgtgatcagtaggtgaaacttcatagttgataggtagtaaaaccccacaaactcatcact 2454043  T
Q  113 ta 114  Q
    ||    
T  2454042 ta 2454041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 21227428 - 21227348
Alignment:
Q  173 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa-tggttacttctaaactct 252  Q
    |||||||| |||| |||||| |||||||| ||||||||| ||||||||| ||||||||||||   ||||||||||||||||    
T  21227428 caacaaataaatagaggggattcgaagaatcctaaccactgctaatattttgcaataaaaaacatgttacttctaaactct 21227348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 2953847 - 2953763
Alignment:
Q  147 aataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 233  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||| | ||| || ||||||  |||||||||||||||||| ||||    
T  2953847 aataatgtttgaccattaattaattccaacaaatg-atataggggatttgaa-aatcctaacggccgctaatattctgcaatcaaaa 2953763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 19398665 - 19398755
Alignment:
Q  167 taatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcgct 256  Q
    ||||| ||||||||  ||| ||| || || ||||| ||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||||    
T  19398665 taattccaacaaatagatagaggagattcaaagaatcctaaccaccgctaatattgtgctataaaaaataggttactactaaactctcgct 19398755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 21884872 - 21884973
Alignment:
Q  18 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 117  Q
    ||||||||||||||| |||||| |||||| ||| ||||||| || ||||||||||  |||||| ||||  | |||||||||  |||||| |||||| |||    
T  21884872 ctctgagagagtaagaccccacgcgtacatacctgtgtgatcagcaggtgcaactagacagctgataggcagtaaaaccccgtaaactcgtcacttgaat 21884971  T
Q  118 ag 119  Q
    ||    
T  21884972 ag 21884973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 8937976 - 8938113
Alignment:
Q  43 tacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaat 141  Q
    ||||||| |||||||| |||||||||||||| ||||||  || || ||||||||||||| ||||||||||||  || | ||      | ||  |||||||    
T  8937976 tacaaactcgtgtgatcagtaggtgcaactcgacagctggtaggataataaaaccccacgaactcatcacttttatgggag------acatttaaccaat 8938069  T
Q  142 atcagaataatgcttgaccattaattaatttcaacaaatgaata 185  Q
      | ||||||| |||||||||||||||||| |||||||||||||    
T  8938070 ccctgaataatacttgaccattaattaattccaacaaatgaata 8938113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 23587870 - 23587790
Alignment:
Q  173 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa-tggttacttctaaactct 252  Q
    |||||||| |||| |||||  ||||||||  |||||||||||||| ||||||||||||||||  ||||||| |||||||||    
T  23587870 caacaaataaatagaggggtttcgaagaattctaaccaccgctaacattctgcaataaaaaacaggttactcctaaactct 23587790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 9890435 - 9890344
Alignment:
Q  161 attaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactct 252  Q
    ||||||||||| |||||||| |||| |||||| | |||||| | ||||| ||||||| |||||||||| ||||  ||||  |||||||||||    
T  9890435 attaattaattccaacaaattaatagaggggatttgaagaatcttaaccgccgctaagattctgcaatcaaaacaggttgtttctaaactct 9890344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 9063067 - 9062981
Alignment:
Q  148 ataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa 234  Q
    |||||| ||||||| ||||||| | ||||||||||||| || ||| || |||||  |||||| ||||||| |||||||||| |||||    
T  9063067 ataatgtttgaccaataattaagtccaacaaatgaatagagaggattctaagaattctaaccgccgctaacattctgcaatcaaaaa 9062981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 9916906 - 9916813
Alignment:
Q  21 tgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 114  Q
    ||||||| ||||||||||||| |||  ||||||||||| || | || |||||| |||||| ||||  | ||||||||||  |||||||||||||    
T  9916906 tgagagaataaggccccacacatacctacccgtgtgattagcatgtacaactcgacagctaataggtagtaaaaccccaataactcatcactta 9916813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 9924818 - 9924725
Alignment:
Q  21 tgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 114  Q
    ||||||| ||||||||||||| |||  ||||||||||| || | || |||||| |||||| ||||  | ||||||||||  |||||||||||||    
T  9924818 tgagagaataaggccccacacatacctacccgtgtgattagcatgtacaactcgacagctaataggtagtaaaaccccaataactcatcactta 9924725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 21912196 - 21912297
Alignment:
Q  18 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 117  Q
    |||||||| |||||| ||||||||||||| ||||||||||| |  | ||||||||||||| || ||||  | |||| ||||   |||||||||||| |||    
T  21912196 ctctgagaaagtaagaccccacacgtacatacccgtgtgatcaacatgtgcaactcaacatctgataggtagtaaagccccgtgaactcatcacttgaat 21912295  T
Q  118 ag 119  Q
    ||    
T  21912296 ag 21912297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 2454021 - 2453950
Alignment:
Q  146 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaa 217  Q
    |||||||||||||||| | ||||| | ||||||||||||| |||||  ||||| || ||||||| |||||||    
T  2454021 gaataatgcttgaccaatcattaaatccaacaaatgaataaagggggttcgaataatcctaaccgccgctaa 2453950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 13707865 - 13707766
Alignment:
Q  21 tgagagagtaaggccccacacgtacaaaccc-gtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatag 119  Q
    |||||||||||||||||||| ||||  |||| ||||||| |  | ||||||||  |||||| ||||  | ||||||||||| ||||||||||||| ||||    
T  13707865 tgagagagtaaggccccacatgtacctaccccgtgtgatcaacatgtgcaacttgacagctgataggtagtaaaaccccacgaactcatcacttagatag 13707766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 16223989 - 16224044
Alignment:
Q  162 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaa 217  Q
    |||||||||| ||||||||||||| |||||| || ||||| |||||||| ||||||    
T  16223989 ttaattaattccaacaaatgaatagaggggattcaaagaatcctaaccatcgctaa 16224044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 21102126 - 21102194
Alignment:
Q  166 ttaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa 234  Q
    |||||| ||||||||  | | |||||| |||||||| |||| |||||||||| ||| ||||||||||||    
T  21102126 ttaattccaacaaatagaaagaggggattcgaagaatcctatccaccgctaacattttgcaataaaaaa 21102194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 33655719 - 33655817
Alignment:
Q  158 accattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgct 256  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||| ||| |||| |||||||||| ||||  ||||||||||||||| |||||    
T  33655719 accattaattaatttcaacaaatgaatagaggggattcgaagaatcctaactaccactaacattctgcaatcaaaacaggttacttctaaactatcgct 33655817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 9386330 - 9386242
Alignment:
Q  146 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa 234  Q
    |||||||| ||||||||||||||||| ||||||||| ||| |||| | |||||||| ||||||| ||||||| |||||||||| |||||    
T  9386330 gaataatgtttgaccattaattaattccaacaaatggatagagggaattcgaagaatcctaaccgccgctaacattctgcaatcaaaaa 9386242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 24187941 - 24188038
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactt 113  Q
    ||||||||||||||||| || |||| ||||  ||||||||||| || ||||||||||| |||||| ||||  | |||||||| | |||||||||||||    
T  24187941 acctctgagagagtaagacctcacatgtacctacccgtgtgatcagcaggtgcaactcgacagctgataggtagtaaaacccaataaactcatcactt 24188038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 34478923 - 34478810
Alignment:
Q  13 cagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcact 112  Q
    ||||||||||||   |||||||| |||||| |||||||||||||| | ||||||||||||  ||| || ||||  | |||||| | || |||||||||||    
T  34478923 cagacctctgag---gtaaggcctcacacgcacaaacccgtgtgaca-gtaggtgcaacttgacacctgataggcagtaaaactctacgaactcatcact 34478828  T
Q  113 taaatagaagtcgtaaaa 130  Q
    || ||||||| |||||||    
T  34478827 tagatagaagacgtaaaa 34478810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 20404510 - 20404555
Alignment:
Q  147 aataatgcttgaccattaattaatttcaacaaatgaatatagggga 192  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  20404510 aataatgcttgaccattaattaattccaacaaatgtatagagggga 20404555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 21547286 - 21547206
Alignment:
Q  34 ccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 114  Q
    ||||| ||||||||||| ||||| | | ||||||||||||||||| |  ||| |||| ||||||| | |||||||||||||    
T  21547286 ccccatacgtacaaacctgtgtggtcaataggtgcaactcaacagatggtaggaaatgaaaccccgcgaactcatcactta 21547206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 28585745 - 28585847
Alignment:
Q  18 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 117  Q
    |||||| |||||||| ||||||||||||  ||| | ||||| |  |||| |||||| |||||| ||||  | ||||||| ||||||||||| ||||| ||    
T  28585745 ctctgatagagtaagaccccacacgtacttaccagcgtgatcaacaggttcaactcgacagctgataggtagtaaaacctcacaaactcattacttagat 28585844  T
Q  118 aga 120  Q
    |||    
T  28585845 aga 28585847  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 15613866 - 15613935
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatag 85  Q
    |||| |||||||||||  ||||||||||||| || |||||||| || ||||||||||  |||||| ||||    
T  15613866 acctttgagagagtaaaaccccacacgtacatacacgtgtgatcagcaggtgcaacttgacagctgatag 15613935  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 23088053 - 23088153
Alignment:
Q  18 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 117  Q
    ||||||||||||||| ||| ||||||||  ||||||||||| || ||||||||| | | |||| |||   | ||||||||||  |||||||||||| |||    
T  23088053 ctctgagagagtaagaccc-acacgtacctacccgtgtgatcagcaggtgcaacacgatagctgataagtagtaaaaccccatgaactcatcacttgaat 23088151  T
Q  118 ag 119  Q
    ||    
T  23088152 ag 23088153  T

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Target: scaffold0085 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 22495 - 22407
Alignment:
Q  146 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa 234  Q
    |||||||||||||||||  | ||||||||||||||||||| |||||| |||||||| ||| ||  ||| ||| | |||||||| |||||    
T  22495 gaataatgcttgaccatagaataatttcaacaaatgaatagaggggattcgaagaatccttactgccgataacaatctgcaatcaaaaa 22407  T

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Target: scaffold0085; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 22614 - 22504
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaa 115  Q
    |||||||||| | |||| |||||||||||||| | |||||||| ||||||||||| |  |||| |  |||  | ||||| ||||| |||||||||||||     
T  22614 acctctgagatattaagaccccacacgtacaatctcgtgtgattagtaggtgcaatttgacagttggtaggtagtaaaatcccacgaactcatcacttag 22515  T
Q  116 atagaagtcgt 126  Q
    ||||||| |||    
T  22514 atagaagacgt 22504  T

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Target: scaffold1017 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 3016 - 2825
Alignment:
Q  16 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaa 115  Q
    |||||||| |||||||| ||||||||||||||||  ||||||| |||| | ||| ||  ||| ||  |||  | |||||||||||||||||||||||||     
T  3016 acctctgacagagtaagaccccacacgtacaaacatgtgtgatcagtatgcgcaccttgacatcttgtaggtagtaaaaccccacaaactcatcacttag 2917  T
Q  116 atagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgct 215  Q
    ||||||  ||  ||||       |||    |||||||| |||||| |||||| ||| ||||||||||||| ||  || | |||||| ||||||| |||||    
T  2916 atagaaaacggtaaaa-------aat----gaataatgtttgaccgttaatttattccaacaaatgaataaagaagatttgaagaatcctaaccgccgct 2828  T

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Target: scaffold0394 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 13763 - 13818
Alignment:
Q  167 taatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattct 223  Q
    ||||| |||||||||||||  ||||| |||||||| ||||||||||||||| |||||    
T  13763 taattccaacaaatgaataacgggga-tcgaagaatcctaaccaccgctaacattct 13818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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