View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2445_low_38 (Length: 282)

Name: NF2445_low_38
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2445_low_38
NF2445_low_38
[»] scaffold0363 (1 HSPs)
scaffold0363 (52-220)||(6628-6796)
[»] chr8 (4 HSPs)
chr8 (52-220)||(14411915-14412083)
chr8 (52-203)||(21591755-21591906)
chr8 (57-220)||(23600493-23600650)
chr8 (66-154)||(29820182-29820270)
[»] chr2 (3 HSPs)
chr2 (52-203)||(22168862-22169013)
chr2 (52-125)||(20630791-20630864)
chr2 (57-155)||(5115381-5115479)
[»] chr7 (1 HSPs)
chr7 (52-220)||(3728937-3729104)
[»] scaffold0063 (1 HSPs)
scaffold0063 (62-178)||(59947-60062)
[»] chr6 (3 HSPs)
chr6 (129-240)||(13734974-13735085)
chr6 (72-157)||(11776643-11776728)
chr6 (60-154)||(14977294-14977388)
[»] chr5 (2 HSPs)
chr5 (57-230)||(11724269-11724442)
chr5 (63-157)||(5782352-5782446)
[»] chr4 (2 HSPs)
chr4 (57-157)||(8668242-8668342)
chr4 (63-155)||(34510933-34511025)
[»] chr1 (4 HSPs)
chr1 (69-157)||(10425025-10425113)
chr1 (69-157)||(1625258-1625346)
chr1 (57-155)||(13310695-13310793)
chr1 (57-142)||(11780566-11780651)
[»] chr3 (6 HSPs)
chr3 (87-157)||(16311284-16311354)
chr3 (87-157)||(16313689-16313759)
chr3 (87-157)||(18488068-18488138)
chr3 (87-157)||(18492278-18492348)
chr3 (87-157)||(18494683-18494753)
chr3 (87-157)||(19829460-19829530)
[»] scaffold0093 (1 HSPs)
scaffold0093 (121-157)||(10761-10797)


Alignment Details
Target: scaffold0363 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 6628 - 6796
Alignment:
52 cagagaccggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
6628 cagagaccggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccgtgtccaagtgctaccaaaggccgacgttgaagcacccacatc 6727  T
152 attgttgttgtagctctgccgagtaggtttatgaggggctgcctcggctacagcaaattgttttcctcg 220  Q
     |||||||||| | ||||||||||||| ||| | || ||| ||||||||||| |||  ||||| |||||    
6728 cttgttgttgttgttctgccgagtaggcttagggggtgctacctcggctacaacaatctgtttccctcg 6796  T

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Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 14412083 - 14411915
Alignment:
52 cagagaccggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
14412083 cagagaccggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccgtgtccaagtgctaccaaaggccgacgttgaagcacccacatc 14411984  T
152 attgttgttgtagctctgccgagtaggtttatgaggggctgcctcggctacagcaaattgttttcctcg 220  Q
     |||||||||| | ||||||||||||| ||| | || ||| ||||||||||| |||  ||||| |||||    
14411983 cttgttgttgttgttctgccgagtaggcttagggggtgctacctcggctacaacaatctgtttccctcg 14411915  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 21591906 - 21591755
Alignment:
52 cagagaccggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatc 151  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| ||||||    
21591906 cagagaccggaaccctctgagttgtagtaacagtcgaagcaaccggaaccggaacccgtgtccaagtactaccaatggccgacgttgaagcacgcacatc 21591807  T
152 attgttgttgtagctctgccgagtaggtttatgaggggctgcctcggctaca 203  Q
     |||||||||| | ||| ||||||||| ||| | || ||| |||||||||||    
21591806 cttgttgttgttgttctaccgagtaggcttagggggtgctacctcggctaca 21591755  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 220
Target Start/End: Complemental strand, 23600650 - 23600493
Alignment:
57 accggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgt 156  Q
    ||||||||||||||||| |||| |||| ||||||||||| ||||| |      |||| ||||||||||| || |||| | ||||||||||||||| ||||    
23600650 accggaaccctctgagtagtagcaacaatcgaagcaaccagaacccg------tgtctaagtgctaccaatgaccgatggtgaagcacccacatccttgt 23600557  T
157 tgttgtagctctgccgagtaggtttatgaggggctgcctcggctacagcaaattgttttcctcg 220  Q
    |||||| | ||||||||||||||||| | |||||| |||||||||||  || |||||| |||||    
23600556 tgttgttgttctgccgagtaggtttagggggggctacctcggctacaataatttgtttccctcg 23600493  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 29820270 - 29820182
Alignment:
66 ctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcatt 154  Q
    ||||||||||| ||||  || |||||| |||||| || |||||| ||| ||||||||||||||||||| || |||||||||||||||||    
29820270 ctctgagtggttgtaattgttgaagcagccggaatcgaaacccacgtctaagtgctaccattggccgaagtggaagcacccacatcatt 29820182  T

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Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 22168862 - 22169013
Alignment:
52 cagagaccggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatc 151  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
22168862 cagagatcggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccgtgtccaagtgctaccaatggccgacgttgaagcacccacatc 22168961  T
152 attgttgttgtagctctgccgagtaggtttatgaggggctgcctcggctaca 203  Q
     |||||||||| | ||| ||||||||| ||| | || ||| |||||||||||    
22168962 cttgttgttgttgttcttccgagtaggcttagggggtgctacctcggctaca 22169013  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 20630864 - 20630791
Alignment:
52 cagagaccggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctacca 125  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||    
20630864 cagagaccggaaccctctaagtggtagtaacagtcgaagcaacaggaaccggaaaccgtgtccaagtgctacca 20630791  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 5115479 - 5115381
Alignment:
57 accggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattg 155  Q
    ||||| ||||||||||||||||||||||||||| ||||||| |  ||||||||||| | | || ||||||||||||| || ||||||||||||||||||    
5115479 accggtaccctctgagtggtagtaacagtcgaaacaaccggtattggaacccatgtaccattgttaccattggccgatgtcgaagcacccacatcattg 5115381  T

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Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 3728937 - 3729104
Alignment:
52 cagagaccggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatc 151  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || ||||| ||||||||||    
3728937 cagagaccagaaccctttgagtggtagtaacagtcgaagcaaccggaaccggaacccgtgtccaagtgctaccaatggccaacattgaatcacccacatc 3729036  T
152 attgttgttgtagctctgccgagtaggtttatgaggggctgcctcggctacagcaaattgttttcctcg 220  Q
     |||||||||| | ||||||||||||| ||| | |||||| ||||||||||| |||  ||||| |||||    
3729037 cttgttgttgttgttctgccgagtaggctta-ggggggctacctcggctacaacaatctgtttccctcg 3729104  T

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Target: scaffold0063 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 60062 - 59947
Alignment:
62 aaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgttgttg 161  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||    
60062 aaccctctgagtggtagtaacagtcgaagcaaccggaatcggaagccatgtacaagtgcta-cattggccgacgttgatgcacccacatcattgttgttg 59964  T
162 tagctctgccgagtagg 178  Q
    | | ||||||| |||||    
59963 ttgttctgccgtgtagg 59947  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 13735085 - 13734974
Alignment:
129 gccgacgttgaagcacccacatcattgttgttgtagctctgccgagtaggtttatgaggggctgcctcggctacagcaaattgttttcctcgttcatgct 228  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||    
13735085 gccgacgttgaagcacccacatcattgttgttgctgctctgccgagtaggcttatgagggcctgcctcggctacaacaaattgttttcctcgttcatact 13734986  T
229 tgctctgtggtg 240  Q
    ||| || |||||    
13734985 tgccctttggtg 13734974  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 11776643 - 11776728
Alignment:
72 gtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgtt 157  Q
    ||||||| ||| || ||||||||| ||||||||||||| ||||||| ||| |||||||||||  | ||||| | ||||||||||||    
11776643 gtggtagcaactgttgaagcaaccagaaccggaacccacgtccaagcgcttccattggccgaaatggaagctcacacatcattgtt 11776728  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 14977388 - 14977294
Alignment:
60 ggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcatt 154  Q
    ||||| ||||||| ||||||||  ||||||| || ||||||||||||||| || ||||| || |||||||| || || ||||| ||| |||||||    
14977388 ggaactctctgagaggtagtaattgtcgaagtaatcggaaccggaacccaagtacaagtactgccattggctgaagtggaagctcccccatcatt 14977294  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 11724442 - 11724269
Alignment:
57 accggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgt 156  Q
    |||||||||| |||||||||| |||| || ||||||| |||| | | |||||||||||||||||| ||||| |||||||| |||||||||||||||||||    
11724442 accggaacccgctgagtggtaataaccgttgaagcaaacggagctgtaacccatgtccaagtgctgccattagccgacgtggaagcacccacatcattgt 11724343  T
157 tgttgtagctctgccgagtaggtttatgaggggctgcctcggctacagcaaattgttttcctcgttcatgcttg 230  Q
    |||||||| ||| ||||||||| ||   ||||| ||||||||| ||| ||| |||||| ||||| |||| ||||    
11724342 tgttgtagttctaccgagtaggcttggtaggggatgcctcggccacaacaatttgtttccctcgatcattcttg 11724269  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 5782352 - 5782446
Alignment:
63 accctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgtt 157  Q
    |||||||  ||||||| ||| || ||||||||||||||||||||||| ||| ||| ||| ||||||||||| || ||||| ||||||||||||||    
5782352 accctcttggtggtagaaactgttgaagcaaccggaaccggaacccacgtcgaagcgcttccattggccgaagtagaagctcccacatcattgtt 5782446  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 8668242 - 8668342
Alignment:
57 accggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgt 156  Q
    |||||||  ||||||||||||||||| || |||||||||||| | |||||||| || |||||||||||||| ||||| || ||||||| |||||||||||    
8668242 accggaattctctgagtggtagtaactgttgaagcaaccggagctggaacccacgtacaagtgctaccattagccgaagtggaagcacgcacatcattgt 8668341  T
157 t 157  Q
    |    
8668342 t 8668342  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 34511025 - 34510933
Alignment:
63 accctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattg 155  Q
    ||||||||||||||||||||||||||| ||||| | |  ||||||||||| | | || |||||||||||||||| ||||||||||||||||||    
34511025 accctctgagtggtagtaacagtcgaaacaaccagtattggaacccatgtaccattgttaccattggccgacgtcgaagcacccacatcattg 34510933  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 10425025 - 10425113
Alignment:
69 tgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgtt 157  Q
    |||||||| ||||| || ||||||||||| ||||||||||| ||||||||||||||| ||||||| || ||||||||| ||||||||||    
10425025 tgagtggttgtaactgttgaagcaaccgggaccggaacccacgtccaagtgctaccaatggccgaagtggaagcacccgcatcattgtt 10425113  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 1625258 - 1625346
Alignment:
69 tgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgtt 157  Q
    |||||||| ||||| || |||||||||||||  |||||||||||||||||  |||||||||| || || ||||||||||| ||||||||    
1625258 tgagtggtggtaactgttgaagcaaccggaattggaacccatgtccaagttataccattggctgaagtagaagcacccacgtcattgtt 1625346  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 13310695 - 13310793
Alignment:
57 accggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattg 155  Q
    ||||| ||||| |||||||||| || | ||||| ||||||| |  ||||||||||| | | || |||||||||| || ||  |||||||||||||||||    
13310695 accggtaccctttgagtggtagcaatactcgaaacaaccggtattggaacccatgtaccattgttaccattggctgatgtcaaagcacccacatcattg 13310793  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 11780566 - 11780651
Alignment:
57 accggaaccctctgagtggtagtaacagtcgaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagc 142  Q
    |||||||| |||||||  || || || ||||||| || ||||||||||||| | |||||||| || ||||||||||| || |||||    
11780566 accggaactctctgagaagtggtgactgtcgaagtaatcggaaccggaacctaagtccaagtacttccattggccgaagtggaagc 11780651  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 16311354 - 16311284
Alignment:
87 gaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgtt 157  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||| || |||| | |||||||||||||    
16311354 gaagcaaccgggaccggaacccacgtccaggtgctaccattggccgaagtggaagtagccacatcattgtt 16311284  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 16313759 - 16313689
Alignment:
87 gaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgtt 157  Q
    ||||||||||| ||||||||||| ||| | |||||||||||||||||  | ||||||||||||||||||||    
16313759 gaagcaaccgggaccggaacccacgtcaaggtgctaccattggccgaaatggaagcacccacatcattgtt 16313689  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 18488138 - 18488068
Alignment:
87 gaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgtt 157  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||| || |||| | |||||||||||||    
18488138 gaagcaaccgggaccggaacccacgtccaggtgctaccattggccgaagtggaagtagccacatcattgtt 18488068  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 18492348 - 18492278
Alignment:
87 gaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgtt 157  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||| || |||| | |||||||||||||    
18492348 gaagcaaccgggaccggaacccacgtccaggtgctaccattggccgaagtggaagtagccacatcattgtt 18492278  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 18494753 - 18494683
Alignment:
87 gaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgtt 157  Q
    ||||||||||| ||||||||||| ||| | |||||||||||||||||  | ||||||||||||||||||||    
18494753 gaagcaaccgggaccggaacccacgtcaaggtgctaccattggccgaaatggaagcacccacatcattgtt 18494683  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 19829460 - 19829530
Alignment:
87 gaagcaaccggaaccggaacccatgtccaagtgctaccattggccgacgttgaagcacccacatcattgtt 157  Q
    |||||||||  |||||||||||||||| ||| |||  ||||||| || || ||||| ||||||||||||||    
19829460 gaagcaaccataaccggaacccatgtcaaagcgcttgcattggctgaagtggaagctcccacatcattgtt 19829530  T

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Target: scaffold0093 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 10797 - 10761
Alignment:
121 taccattggccgacgttgaagcacccacatcattgtt 157  Q
    ||||||||||||| |||||||||||||||||| ||||    
10797 taccattggccgatgttgaagcacccacatcaatgtt 10761  T

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