View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_3_N (Length: 683)
Name: NF2445_low_3_N
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_3_N |
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| [»] scaffold0415 (2 HSPs) |
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| [»] scaffold0559 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 40813035 - 40812442
Alignment:
| Q |
1 |
taatgctcgacccacataaagcatgtgtttggcatgatggtgcgtatgtcagaactatcaacgtggtatggtagagtcttttaaccatttgttcgtagat |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40813035 |
taatgctcgatccacataaagcatgtgtttggcatgatggtgcgtatgtcagaactatcaacgtggtatggtagtgtcttttaaccatttgttcgtagat |
40812936 |
T |
|
| Q |
101 |
tcaatctctaacaattgcatatgaaaaacacatgttgaaagagatgaactccttgaattgatctcagttacttannnnnnnnnagaggaatttatctcaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
40812935 |
tcaatctctaacaactgcatatgaaaaacacatgttgaaagagatgaactccttgaattgatctcagttacttattttttta-ag-ggaatttatctcaa |
40812838 |
T |
|
| Q |
201 |
ataatttgtctctacatttgtgcataaggatannnnnnnncccatnnnnnnntcaataagaaaaagttggttgaaaactccgggggtttgaacttgtcac |
300 |
Q |
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| T |
40812837 |
ataatttgtctctacatttgtgcataaggatattttttttcccataaaaaaatcaataagaacaagttggttgaaaactccgggggtttgaacttgtcac |
40812738 |
T |
|
| Q |
301 |
tcagttagtaattaactaatttgaatcactttttccacgagtacattgaactgaattattatttccaaaaaggtgcttctaagaaacaggcaagttagtg |
400 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
40812737 |
tcagttactaattaactaatttgaatcactttttccacgagtacattgaactgaattattatttccaaaaaggcgcttctaagaaacagccaagttagtg |
40812638 |
T |
|
| Q |
401 |
taggaacattaggcatataaataagctgttgatcaccacacttctttcaaaaatcaaaacatacaccaattaatagaagctcaatcctcttgaatatcac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40812637 |
taggaacattaggcatataaataagctgttgatcaccacacttctttcaaaaatcaaaacatacaccaattaatagaagctcaatcctcttgaatatcac |
40812538 |
T |
|
| Q |
501 |
aatcataatagtaacaaaaaatggccaaggttcatccacatcaagaatccacatcctctgattgtctcatcagcaggtctaataaaagagaaacat |
596 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40812537 |
aatcataatagtaacaaaaaatggccaaagttcatccacatcaagaatccacatcctctgattctctcatcagcaggtctaataaaagagaaacat |
40812442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 401 - 553
Target Start/End: Complemental strand, 40817814 - 40817659
Alignment:
| Q |
401 |
taggaacattaggcatata--aataagctgttgatcaccacacttctttcaaaaatcaaaacatacaccaattaat-agaagctcaatcctcttgaatat |
497 |
Q |
| |
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||||||||||||||||||| |||||| || | ||||| | ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |
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| T |
40817814 |
taggaacattaggcatatataaataagttgctaatcactcctcttctttcaaaaatcaaaacatacaacaattaattataagctcaatcctcttgaatat |
40817715 |
T |
|
| Q |
498 |
cacaatcataatagtaacaaaaaatggccaaggttcatccacatcaagaatccaca |
553 |
Q |
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|||||||| |||||||| ||| |||||||| || |||| || |||||||||||| |
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| T |
40817714 |
cacaatcacaatagtaaaaaagaatggccagaatttatcctcaacaagaatccaca |
40817659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 464 - 551
Target Start/End: Complemental strand, 40805867 - 40805779
Alignment:
| Q |
464 |
caccaattaat-agaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaatggccaaggttcatccacatcaagaatcca |
551 |
Q |
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| T |
40805867 |
caccaattaattagaagcttgatcctcttgaatatcacaatcataatagtaacaaaaaatggccaaagtttatccacatcaagaatcca |
40805779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 591
Target Start/End: Complemental strand, 40807380 - 40807350
Alignment:
| Q |
561 |
attgtctcatcagcaggtctaataaaagaga |
591 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
40807380 |
attgtctcatcagcaggtctaataaaagaga |
40807350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 258 - 596
Target Start/End: Original strand, 14423 - 14763
Alignment:
| Q |
258 |
aagaaaaagttggttgaaaactccgggggtttgaacttgtcactcagttagtaattaactaatttgaatcactttt-tccacgagtacattgaactgaat |
356 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14423 |
aagaacaagttggttgaaaactccgggg-tttgaacttgtcactcagttactaattaactaatttgaatcacttttttccacgagtacattgaactgaat |
14521 |
T |
|
| Q |
357 |
tattatttccaaaaaggtgcttctaagaaacaggcaagttagtgtaggaacattaggcatataaataagctgttgatcaccacacttctttc-aaaaatc |
455 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14522 |
tattatttccaaaaaggcgcttctaagaaacagccaagttagtgtaggaacattaggcatataaataagctgttgatcaccacacttctttcaaaaaatc |
14621 |
T |
|
| Q |
456 |
aaaacatacaccaattaatagaagctcaatcctcttgaatatcacaatcataatagtaac-aaaaaatggccaaggttcatccacatcaagaatccacat |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
14622 |
aaaacatacaccaattaatagaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaaatggccaaagttcatccacatcaagaatccacat |
14721 |
T |
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| Q |
555 |
cctctgattgtctcatcagcaggtctaataaaagagaaacat |
596 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14722 |
cctctgattctctcatcagcaggtctaataaaagagaaacat |
14763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 14356 - 14393
Alignment:
| Q |
195 |
tctcaaataatttgtctctacatttgtgcataaggata |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
14356 |
tctcaaataatttgtctctacatttgtgcataaggata |
14393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 464 - 551
Target Start/End: Original strand, 8776 - 8865
Alignment:
| Q |
464 |
caccaattaat-agaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaatggcc-aaggttcatccacatcaagaatcca |
551 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| |
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|
| T |
8776 |
caccaattaattagaagcttgatcctcttgaatatcacaatcataatagtaacaaaaaatggccaaagttttatccacatcaagaatcca |
8865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 591
Target Start/End: Original strand, 7246 - 7276
Alignment:
| Q |
561 |
attgtctcatcagcaggtctaataaaagaga |
591 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7246 |
attgtctcatcagcaggtctaataaaagaga |
7276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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