View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2445_low_40 (Length: 278)

Name: NF2445_low_40
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2445_low_40
NF2445_low_40
[»] chr6 (7 HSPs)
chr6 (63-237)||(14970447-14970622)
chr6 (71-155)||(14979915-14979998)
chr6 (71-155)||(14989027-14989110)
chr6 (180-237)||(7682174-7682231)
chr6 (63-237)||(8403364-8403544)
chr6 (38-73)||(14966002-14966037)
chr6 (71-211)||(9191420-9191560)
[»] chr2 (3 HSPs)
chr2 (58-237)||(24786523-24786703)
chr2 (78-234)||(23656030-23656186)
chr2 (71-217)||(44586047-44586193)
[»] chr7 (7 HSPs)
chr7 (58-237)||(20026350-20026530)
chr7 (58-237)||(13477231-13477411)
chr7 (82-235)||(4531342-4531495)
chr7 (71-157)||(15866928-15867013)
chr7 (71-157)||(16060893-16060978)
chr7 (71-157)||(48377196-48377279)
chr7 (41-73)||(11655405-11655437)
[»] chr4 (5 HSPs)
chr4 (58-237)||(11097964-11098144)
chr4 (78-237)||(11556315-11556474)
chr4 (78-138)||(18231148-18231208)
chr4 (134-233)||(18220368-18220467)
chr4 (112-237)||(15872420-15872545)
[»] scaffold0737 (1 HSPs)
scaffold0737 (71-237)||(3237-3403)
[»] chr8 (2 HSPs)
chr8 (71-237)||(29294244-29294410)
chr8 (71-157)||(23658914-23658999)
[»] chr3 (13 HSPs)
chr3 (71-236)||(17791265-17791430)
chr3 (71-236)||(19099705-19099870)
chr3 (71-237)||(14481195-14481360)
chr3 (71-157)||(16642677-16642762)
chr3 (71-155)||(4712452-4712535)
chr3 (82-157)||(14062431-14062505)
chr3 (112-237)||(16359151-16359276)
chr3 (109-237)||(21975620-21975748)
chr3 (109-237)||(21998051-21998179)
chr3 (77-237)||(22924251-22924411)
chr3 (71-234)||(5943533-5943696)
chr3 (109-157)||(14054702-14054749)
chr3 (109-225)||(22160215-22160331)
[»] chr5 (3 HSPs)
chr5 (71-234)||(24831597-24831759)
chr5 (180-237)||(23960481-23960538)
chr5 (180-237)||(13937416-13937473)
[»] chr1 (3 HSPs)
chr1 (78-214)||(1566682-1566818)
chr1 (71-157)||(13881907-13881992)
chr1 (72-157)||(51626644-51626728)
[»] scaffold0319 (1 HSPs)
scaffold0319 (71-157)||(13220-13305)
[»] scaffold0003 (1 HSPs)
scaffold0003 (71-157)||(131162-131247)
[»] scaffold0091 (1 HSPs)
scaffold0091 (71-157)||(29438-29523)
[»] scaffold0218 (1 HSPs)
scaffold0218 (82-157)||(14768-14842)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 63 - 237
Target Start/End: Original strand, 14970447 - 14970622
Alignment:
Q  63 catcgtcat-aactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattc 161  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14970447 catcgtcattaactccttcatacttattcttctcaataaaaccactgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattc 14970546  T
Q  162 cccttgtcttaaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14970547 cccttgtcttaaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 14970622  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 14979998 - 14979915
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgt 155  Q
    |||||| ||| |||||||||| ||||||||||| | | ||||||||||||| ||||||||| |||||| ||||||||| ||||||    
T  14979998 taactctttcctacttattctcctcaataaaacgactttatatcttattac-ttgttctcacgttcgtcgtcatctatacatcgt 14979915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 14989110 - 14989027
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgt 155  Q
    |||||| ||| |||||||||| ||||||||||| | | ||||||||||||| ||||||||| |||||| ||||||||| ||||||    
T  14989110 taactctttcctacttattctcctcaataaaacgactttatatcttattac-ttgttctcacgttcgtcgtcatctatacatcgt 14989027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 7682231 - 7682174
Alignment:
Q  180 tctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    ||||||||| ||||| ||| | ||| ||||||||||||||||||||||||||||||||    
T  7682231 tctaatttaaagttactatgttaccttatcattaattttgacttcaacaactttcctc 7682174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 237
Target Start/End: Complemental strand, 8403544 - 8403364
Alignment:
Q  63 catcgtcat-aactccttcatacttattcttctcaat-aaaaccattgtatatcttattactt----tgttctcatgttcgtagtcatctatgcatcgtc 156  Q
    ||||||||| ||||| ||| || |||||||||||| | ||||| | | |||||||||||| ||    ||||||||  ||||| ||||||||| ||||| |    
T  8403544 catcgtcattaactctttcgtaattattcttctcatttaaaactactttatatcttattaattatcttgttctcacattcgtcgtcatctatacatcgac 8403445  T
Q  157 cattccccttgtcttaaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
     |||| |||  |||||| ||    |||||||| ||||||||||||||  ||||| || |||||||||||  ||||||||||    
T  8403444 tattctcctaatcttaacttaatcctaatttaaagttattatctcactttatcagtacttttgacttcagaaactttcctc 8403364  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 14966002 - 14966037
Alignment:
Q  38 cacagataaacatcatcactctcatcatcgtcataa 73  Q
    |||||||||||||||||||||||||||| |||||||    
T  14966002 cacagataaacatcatcactctcatcattgtcataa 14966037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 9191420 - 9191560
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtct 170  Q
    |||||| ||||||||||||| ||||| ||||   | | ||||||||||||| | |||||||  ||||| | ||| ||| ||||| |||||| |||  |||    
T  9191420 taactctttcatacttattcctctcattaaagttactttatatcttattacctcgttctcactttcgtcgccatgtatacatcgaccattctcctaatct 9191519  T
Q  171 taaatttggtctaatttagagttattatctcaccctatcat 211  Q
    ||| ||   ||||||||| | |||| |||||||| ||||||    
T  9191520 taacttcattctaatttaaaattataatctcaccttatcat 9191560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 24786523 - 24786703
Alignment:
Q  58 ctcatcatcgtcat-aactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtc 156  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||| ||||||||| |    
T  24786523 ctcaccatcgtcattaactccttcatacttattcttctcaataaaacaactttatctcttattactttgttctcatgttcgtagtcatttatgcatcgcc 24786622  T
Q  157 cattccccttgtcttaaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    |||||||||  |||||| || | ||||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  24786623 cattcccctaatcttaacttcgttctaatttatagttattatctcaccttatcattaatttcgacttcaacaagtttcctc 24786703  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 234
Target Start/End: Complemental strand, 23656186 - 23656030
Alignment:
Q  78 ttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtcttaaattt 177  Q
    |||||||||||||| ||||||||||| ||  ||||||||||||||||||||  |||||| ||||| ||||||||| ||||||||||||  |||||| ||     
T  23656186 ttcatacttattctcctcaataaaactatattatatcttattactttgttcagatgttcatagtcgtctatgcattgtccattcccctaatcttaacttc 23656087  T
Q  178 ggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttc 234  Q
      ||||||||| ||| ||||||||||| ||| |||||| | ||||||||||||||||    
T  23656086 attctaatttaaagtaattatctcaccttattattaatctcgacttcaacaactttc 23656030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 44586193 - 44586047
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtct 170  Q
    |||||| ||||||||||||||  | |||||||| ||| |||||||||||| |||||| | |||||||||||||||||| |||| |||||||||||  |||    
T  44586193 taactctttcatacttattctcttaaataaaactattttatatcttattaatttgttgtgatgttcgtagtcatctattcatcatccattcccctaatct 44586094  T
Q  171 taaatttggtctaatttagagttattatctcaccctatcattaattt 217  Q
    ||| ||   ||||||||| |||||||||||||||  |||||||||||    
T  44586093 taacttcattctaatttaaagttattatctcacctcatcattaattt 44586047  T

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Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 20026350 - 20026530
Alignment:
Q  58 ctcatcatcgtcat-aactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtc 156  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||  | | |||||||||||| ||||||||||| ||| || |||| |||||||||||    
T  20026350 ctcaccatcgtcattaactccttcatactgattcttctcaataaaaataatttatatcttattaatttgttctcatattcatattcatatatgcatcgtc 20026449  T
Q  157 cattccccttgtcttaaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    |||||||||  |||||| ||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20026450 cattcccctaatcttaacttcattctaatttagagttattatctcaccctatcattaatttcgacttcaacaactttcctc 20026530  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 237
Target Start/End: Complemental strand, 13477411 - 13477231
Alignment:
Q  58 ctcatcatcgtcat-aactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtc 156  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||  | | ||||||||||||||||||||||||||| ||||||||| |||| | |||    
T  13477411 ctcaccatcgtcattaactccttcatacttattcttctcaataaaatgactttatatcttattactttgttctcatgtttgtagtcatccatgcgttgtc 13477312  T
Q  157 cattccccttgtcttaaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    |||||||||  |||||| || | ||||| ||| | ||||||||||||| |||||||||||| ||||||| |||||||||||    
T  13477311 cattcccctaatcttaacttcgttctaaattaaacttattatctcaccttatcattaatttggacttcagcaactttcctc 13477231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 4531495 - 4531342
Alignment:
Q  82 tacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtcttaaatttggtc 181  Q
    ||||||||||| |||||||||| ||  ||||||||||| |||| |||||| || ||||||||||||||||| |||||||| |||  |||||| || | ||    
T  4531495 tacttattcttttcaataaaacgatcttatatcttattgctttattctcacgtgcgtagtcatctatgcattgtccattcacctaatcttaacttcgttc 4531396  T
Q  182 taatttagagttattatctcaccctatcattaattttgacttcaacaactttcc 235  Q
    ||||||| ||||||||||||||| ||||||| | || |||||||||| ||||||    
T  4531395 taatttaaagttattatctcaccttatcattgaattcgacttcaacagctttcc 4531342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 15867013 - 15866928
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    |||||| ||| |||||||||  ||||||||||| | | ||||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  15867013 taactctttcctacttattcacctcaataaaacgactttatatcttattactt-gttctcacgttcgtcgtcatctatgcatcgtcc 15866928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 16060893 - 16060978
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    |||||| ||| |||||||||| ||||||||||| | | ||||||||||||| ||||||||| |||||| ||||||||| | ||||||    
T  16060893 taactctttcctacttattctcctcaataaaacgactttatatcttattac-ttgttctcacgttcgtcgtcatctatacttcgtcc 16060978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 48377196 - 48377279
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    |||||| ||| |||||||||| ||||||||||| | | ||||||||||||| ||||||||  |||||| ||||||||| || |||||    
T  48377196 taactctttcctacttattctcctcaataaaacgactttatatcttattac-ttgttctc--gttcgtcgtcatctatacaccgtcc 48377279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 11655405 - 11655437
Alignment:
Q  41 agataaacatcatcactctcatcatcgtcataa 73  Q
    ||||||| |||||||||||||||||||||||||    
T  11655405 agataaatatcatcactctcatcatcgtcataa 11655437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 58 - 237
Target Start/End: Complemental strand, 11098144 - 11097964
Alignment:
Q  58 ctcatcatcgtcat-aactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtc 156  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||| |||||||| |||||||| ||    
T  11098144 ctcaccatcgtcattaattccttcatacttattcttctcaataaaacgactttatctcttattactttgttctcatgtttgtagtcatttatgcatcttc 11098045  T
Q  157 cattccccttgtcttaaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    |||||||||  |||||| || | ||||||||| ||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  11098044 cattcccctaatcttaacttcgttctaatttaaagttattatctcaccttatcattaattttgacttcagaaactttcctc 11097964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 78 - 237
Target Start/End: Original strand, 11556315 - 11556474
Alignment:
Q  78 ttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtcttaaattt 177  Q
    |||||| ||||||| ||||||||||| ||| | ||||||||||||||||| | |||||||||||||||||| |||| |||||||||||  |||||| ||     
T  11556315 ttcatatttattctcctcaataaaactattttttatcttattactttgttgtgatgttcgtagtcatctattcatcatccattcccctaatcttaacttc 11556414  T
Q  178 ggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
      ||||||||| ||||||||||||||| |||||||||||| ||||||| |||||||||||    
T  11556415 attctaatttaaagttattatctcaccatatcattaatttcgacttcagcaactttcctc 11556474  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 18231208 - 18231148
Alignment:
Q  78 ttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgt 138  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  18231208 ttcatacttattcttctcaataaaactattttatatcttattactttgttctcaagttcgt 18231148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 18220467 - 18220368
Alignment:
Q  134 ttcgtagtcatctatgcatcgtccattccccttgtcttaaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaacttt 233  Q
    ||||||| ||||||| |||| |||||||||||  |||||| ||   |||||| || ||||||||||||||| |||||||||||| |||||||||||||||    
T  18220467 ttcgtagccatctattcatcatccattcccctaatcttaacttcattctaatataaagttattatctcaccttatcattaatttcgacttcaacaacttt 18220368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 15872545 - 15872420
Alignment:
Q  112 atcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtcttaaatttggtctaatttagagttattatctcaccctatcat 211  Q
    |||||||||| |||||||||  ||||| ||||||||| ||||| | |||| |||  |||||| ||    |||||||| |||||||||||||  ||||||     
T  15872545 atcttattaccttgttctcacattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaagttattatctcattctatcag 15872446  T
Q  212 taattttgacttcaacaactttcctc 237  Q
    || ||||||  |||  ||||||||||    
T  15872445 tacttttgatatcagaaactttcctc 15872420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 71 - 237
Target Start/End: Complemental strand, 3403 - 3237
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtct 170  Q
    |||||| |||||||| ||||| ||||||||||| ||  ||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||  |||    
T  3403 taactctttcatactcattctcctcaataaaacgatcttatatcttattactttgttcttacgtgtgtagtcatctatgcatcgtccattcccctaatct 3304  T
Q  171 taaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    ||| || | ||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||    
T  3303 taacttcgttctaatttaaagttattatctcaccttatcattaaattagacttcaacaactttcctc 3237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 71 - 237
Target Start/End: Original strand, 29294244 - 29294410
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtct 170  Q
    |||||| |||||||||||||| ||||||||||| ||  |||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||  |||    
T  29294244 taactctttcatacttattctcctcaataaaacgatcttatatcttgttactttgttctcacgtgcgtagtcatctgtgcatcgtccattcccctactct 29294343  T
Q  171 taaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    ||| || |  |||||||| ||||||||||||||| ||| ||||| |||||||||| |||||||||||    
T  29294344 taacttcgtcctaatttaaagttattatctcaccttataattaaatttgacttcagcaactttcctc 29294410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 23658914 - 23658999
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    |||||| ||| |||||||||| ||||||||||| ||| ||||||||||||| ||||||||| |||||| ||||||||| ||| ||||    
T  23658914 taactctttcctacttattctactcaataaaacgattttatatcttattac-ttgttctcacgttcgtcgtcatctatacatggtcc 23658999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 17791265 - 17791430
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtct 170  Q
    |||||| ||||||||||| || |||||||||||  |  ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||  |||    
T  17791265 taactctttcatacttatcctcctcaataaaactgtcttatatcttatttctttgttctcatgttcgtagtcatttatgcatcgtccatttccctaatct 17791364  T
Q  171 taaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcct 236  Q
    ||| |||| ||||||||| |||| |||||||||| |||||||| ||| ||||||| ||||||||||    
T  17791365 taactttgttctaatttaaagttgttatctcaccttatcattagtttcgacttcagcaactttcct 17791430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 19099705 - 19099870
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtct 170  Q
    |||||| ||||||||||| || |||||||||||  |  ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||  |||    
T  19099705 taactctttcatacttatcctcctcaataaaactgtcttatatcttatttctttgttctcatgttcgtagtcatttatgcatcgtccatttccctaatct 19099804  T
Q  171 taaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcct 236  Q
    ||| |||| ||||||||| |||| |||||||||| |||||||| ||| ||||||| ||||||||||    
T  19099805 taactttgttctaatttaaagttgttatctcaccttatcattagtttcgacttcagcaactttcct 19099870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 237
Target Start/End: Complemental strand, 14481360 - 14481195
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtct 170  Q
    |||||| ||||||||||| || |||||||||   ||  ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |||    
T  14481360 taactctttcatacttatcctcctcaataaagt-atcttatatcttattactttgttctcatgttcgtagtcatctaggcatcgtccatttccctaatct 14481262  T
Q  171 taaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    ||| |  | ||||||||| ||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  14481261 taactccgttctaatttaaagttactgtctcaccttatcattaattttgacttcaacaactttcctc 14481195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 16642677 - 16642762
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    |||||| ||| |||||||||| ||||||||||| | | ||||||||||||| ||||||||| |||||| ||||||||| ||||||||    
T  16642677 taactctttcctacttattctcctcaataaaacgactttatatcttattac-ttgttctcacgttcgtcgtcatctatacatcgtcc 16642762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 4712535 - 4712452
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgt 155  Q
    |||||| ||| |||||||||| ||||||||||| | | ||||||||||||| ||||||||| |||||| ||||||||| ||||||    
T  4712535 taactctttcctacttattctcctcaataaaacgactttatatcttattac-ttgttctcacgttcgtcgtcatctatacatcgt 4712452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 14062505 - 14062431
Alignment:
Q  82 tacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    |||||||||  ||||||||||| | | ||||||||||||||| ||||||| |||||| |||| |||||||||||||    
T  14062505 tacttattcacctcaataaaacgaatttatatcttattactt-gttctcacgttcgtcgtcacctatgcatcgtcc 14062431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 16359276 - 16359151
Alignment:
Q  112 atcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtcttaaatttggtctaatttagagttattatctcaccctatcat 211  Q
    |||||||||| |||||||||  ||||| ||||||||| ||||| | |||| |||  |||||| ||    |||||||| |||||||||||||  ||||||     
T  16359276 atcttattaccttgttctcacattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaagttattatctcattctatcag 16359177  T
Q  212 taattttgacttcaacaactttcctc 237  Q
    || ||||||| |||  ||||||||||    
T  16359176 tacttttgacatcagaaactttcctc 16359151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 21975620 - 21975748
Alignment:
Q  109 tatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtcttaaatttggtctaatttagagttattatctcaccctat 208  Q
    ||||||||||||| |||||||||  ||||| ||||||||| ||||| | |||| |||  |||||| ||    |||||||| | ||||||||||||  |||    
T  21975620 tatatcttattaccttgttctcacattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaatttattatctcactttat 21975719  T
Q  209 cattaattttgacttcaacaactttcctc 237  Q
    || || | |||||||||  ||||||||||    
T  21975720 caatactcttgacttcagaaactttcctc 21975748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 21998051 - 21998179
Alignment:
Q  109 tatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtcttaaatttggtctaatttagagttattatctcaccctat 208  Q
    ||||||||||||| |||||||||  ||||| ||||||||| ||||| | |||| |||  |||||| ||    |||||||| | ||||||||||||  |||    
T  21998051 tatatcttattaccttgttctcacattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaatttattatctcactttat 21998150  T
Q  209 cattaattttgacttcaacaactttcctc 237  Q
    || || | |||||||||  ||||||||||    
T  21998151 caatactcttgacttcagaaactttcctc 21998179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 237
Target Start/End: Original strand, 22924251 - 22924411
Alignment:
Q  77 cttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtcttaaatt 176  Q
    ||||||||||||||||| || ||||   | | |||||||||||||||||||||||  ||||| ||||| ||| |||||  |||||   |   ||||| ||    
T  22924251 cttcatacttattcttcccattaaagtgactttatatcttattactttgttctcacattcgtcgtcatatatacatcgatcattctattaaacttaactt 22924350  T
Q  177 tggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
       |||| |||| ||||||||||||| | |||  ||| ||| |||||||||||||||||||    
T  22924351 cattctattttaaagttattatctcatcttatagttactttcgacttcaacaactttcctc 22924411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 5943696 - 5943533
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtct 170  Q
    |||||| |||| |||||||||||||| |||| | | | ||||||||||||  |  ||||||  ||| | ||||||||| ||| | |||||| |||  |||    
T  5943696 taactctttcaaacttattcttctcattaaagcgactttatatcttattatctcattctcacattcctcgtcatctatacattgaccattctcctaatct 5943597  T
Q  171 taaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttc 234  Q
    ||| |||| ||||||||  | |||||||| |||| ||||||||  ||  ||||||| |||||||    
T  5943596 taattttgttctaatttgaaattattatcacaccttatcattaccttcaacttcaataactttc 5943533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 14054749 - 14054702
Alignment:
Q  109 tatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    ||||||||||||||| ||||||| |||||| |||| |||||||||||||    
T  14054749 tatatcttattactt-gttctcacgttcgtcgtcacctatgcatcgtcc 14054702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 22160215 - 22160331
Alignment:
Q  109 tatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtcttaaatttggtctaatttagagttattatctcaccctat 208  Q
    ||||||||||||| |||||||||  ||||| ||||||||| ||||| | |||| |||  |||||| ||    |||||||| | ||||||||||||  |||    
T  22160215 tatatcttattaccttgttctcacattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaatttattatctcactttat 22160314  T
Q  209 cattaattttgacttca 225  Q
    || || | |||||||||    
T  22160315 caatactcttgacttca 22160331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 24831759 - 24831597
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtct 170  Q
    |||||| ||||||||||| || ||||||||| | ||  ||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||  |||    
T  24831759 taactctttcatacttatcctcctcaataaa-ctatcttatatcttattactttgttctcatgttcgtagtcatctaggcatcatccatttccctaatct 24831661  T
Q  171 taaatttggtctaatttagagttattatctcaccctatcattaattttgacttcaacaactttc 234  Q
    ||| |  | ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  24831660 taactccgttctaatttaaagttactatctcaccttatcattaattttgacttcaacaactttc 24831597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 23960538 - 23960481
Alignment:
Q  180 tctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    ||||||||| ||||||||||||||| || ||||| ||||||| ||| |||||||||||    
T  23960538 tctaatttaaagttattatctcaccttaccattacttttgacgtcagcaactttcctc 23960481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 13937416 - 13937473
Alignment:
Q  180 tctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctc 237  Q
    ||||||||| ||||||||||||||| |||||||| ||| |||||| | ||||| ||||    
T  13937416 tctaatttaaagttattatctcaccttatcattactttcgacttcgaaaacttccctc 13937473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 1566818 - 1566682
Alignment:
Q  78 ttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtccattccccttgtcttaaattt 177  Q
    |||||||||||||| ||||||||||| ||| |||||| |||||||||||||||| |  ||| ||||||||||||||||||||||| ||  |||||| ||     
T  1566818 ttcatacttattctcctcaataaaacaattttatatcctattactttgttctcacgcgcgtcgtcatctatgcatcgtccattcctctaatcttaacttc 1566719  T
Q  178 ggtctaatttagagttattatctcaccctatcattaa 214  Q
    | ||||||||| |||||||||| |||| || ||||||    
T  1566718 gttctaatttaaagttattatcccaccttaccattaa 1566682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 13881992 - 13881907
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    |||||| ||| |||||||||| ||||||||||| | | ||||||||||||| ||||||||| |||||| ||||||||| ||||||||    
T  13881992 taactctttcctacttattctcctcaataaaacgactttatatcttattac-ttgttctcacgttcgtcgtcatctatacatcgtcc 13881907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 51626728 - 51626644
Alignment:
Q  72 aactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    ||||| ||| |||||||||| ||| ||||||| | | ||||||||||||| ||||||||| |||||| ||||||||| ||||||||    
T  51626728 aactctttcctacttattctcctccataaaacgactttatatcttattac-ttgttctcacgttcgtcgtcatctatacatcgtcc 51626644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 13305 - 13220
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    |||||| ||| |||||||||| ||||||||||| | | ||||||||| ||||| |||||||||||||| ||||||||| ||||||||    
T  13305 taactctttcttacttattctcctcaataaaacgactttatatcttagtactt-gttctcatgttcgtcgtcatctatacatcgtcc 13220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 131162 - 131247
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    |||||| ||| |||||||||||||||||||||| | | ||||||||||||| ||||||||| |||||| ||||| ||| ||||||||    
T  131162 taactctttcctacttattcttctcaataaaacgactttatatcttattac-ttgttctcacgttcgtcgtcatttatacatcgtcc 131247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 29438 - 29523
Alignment:
Q  71 taactccttcatacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
    |||||| ||| |||||||||| ||||||||||| | | ||||||||||||| |||||| || |||||| ||||||||| ||||||||    
T  29438 taactctttcctacttattctcctcaataaaacgactttatatcttattac-ttgttcacacgttcgtcgtcatctatacatcgtcc 29523  T

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Target: scaffold0218 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 14768 - 14842
Alignment:
Q  82 tacttattcttctcaataaaaccattgtatatcttattactttgttctcatgttcgtagtcatctatgcatcgtcc 157  Q
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T  14768 tacttattctcctcaataaaacgactttatatcttatta-gttgttctcacgttcgtcgtcatctatacatcgtcc 14842  T

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