View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2445_low_44 (Length: 269)
Name: NF2445_low_44
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_44 |
 | |
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| [»] chr7 (5 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
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|
| [»] chr2 (4 HSPs) |
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|
| [»] scaffold0596 (1 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0045 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 43071085 - 43071325
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
43071085 |
ggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaa |
43071184 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43071185 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatt |
43071284 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43071285 |
tgggaattggaggataattaatgagtcaaaacttggataag |
43071325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 1262507 - 1262266
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
1262507 |
ggagaaagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttcgagtaaaagcaa |
1262408 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa--tgaaggagaaagaggtggacatagataagtgtggagtcaat |
227 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
1262407 |
tatgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataagtgtggagtcaat |
1262308 |
T |
|
| Q |
228 |
ttaggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1262307 |
ttgggaattggaggataattaatgagtcaaaacttggataag |
1262266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 269
Target Start/End: Original strand, 48849601 - 48849750
Alignment:
| Q |
122 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa--tgaaggagaaagaggtggacatagataagtgtg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
48849601 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagatgagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataagtgtg |
48849700 |
T |
|
| Q |
220 |
gagtcaatttaggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
48849701 |
gagtcaatttgggaatttgaggataattaatgagtcaaaacttggataag |
48849750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 26909806 - 26909905
Alignment:
| Q |
149 |
agaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataat |
246 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||| ||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
26909806 |
agaaggaataatgggagaggagaaaagagaacgttaaaaatgaaggagaaaaaggtgggcatggataagtgtggagtcaatctgggaattggaggataat |
26909905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 48849485 - 48849565
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagaga |
110 |
Q |
| |
|
||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48849485 |
ggagaaagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagaga |
48849565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 19881814 - 19882054
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
19881814 |
ggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaa |
19881913 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
19881914 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagataacttaaaaatgaaggagaaagaggtggacatcgataaatgtggagtcaatt |
19882013 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19882014 |
tgggaattggaggataattaatgagtcaaaatttggataag |
19882054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 37982770 - 37982530
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
37982770 |
ggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcagagggcgaagagatttttttgagtaaaagcaa |
37982671 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37982670 |
tctgaattccaaaacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatt |
37982571 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37982570 |
tgggaattggaggataattaatgagtcaaaacttggataag |
37982530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 53972989 - 53973229
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
53972989 |
ggagagagcggcaacgacagagaattttgtttaaatgtctgagagtgaggtggaagatgaacaactcaaagggagaagagatttttttgagtaaaagcaa |
53973088 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53973089 |
tctgaattccaacacataaagaatgaataatgggagaggagagaagaaaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatt |
53973188 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53973189 |
tgagaattggaggataattaatgagtcaaaatttggataag |
53973229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 52 - 269
Target Start/End: Complemental strand, 31685474 - 31685255
Alignment:
| Q |
52 |
aattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnn-gagaaaaagcaatctgaattccaacacataaag |
150 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
31685474 |
aattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttttgagtaaaagcaatttgaattccaacacataaag |
31685375 |
T |
|
| Q |
151 |
aaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaa |
249 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31685374 |
aaggaataatggaagaggagagaaaagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgagaattggaggataattaa |
31685275 |
T |
|
| Q |
250 |
tgagtcaaaatttggataag |
269 |
Q |
| |
|
|||||||||| ||| ||||| |
|
|
| T |
31685274 |
tgagtcaaaacttgaataag |
31685255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 12742106 - 12741866
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
12742106 |
ggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaa |
12742007 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12742006 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatt |
12741907 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12741906 |
tgggaattggaggataattaatgagtcaaaacttggataag |
12741866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 23348683 - 23348923
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
23348683 |
ggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaa |
23348782 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23348783 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatt |
23348882 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23348883 |
tgggaattggaggataattaatgagtcaaaacttggataag |
23348923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 18355016 - 18355256
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
18355016 |
ggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgagatggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaa |
18355115 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18355116 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatt |
18355215 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18355216 |
tgggaattggaggataattaatgagtcaaaacttggataag |
18355256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 56 - 269
Target Start/End: Original strand, 10328626 - 10328840
Alignment:
| Q |
56 |
ttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaagga |
155 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10328626 |
ttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataaagaagga |
10328725 |
T |
|
| Q |
156 |
ataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10328726 |
ataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagt |
10328825 |
T |
|
| Q |
255 |
caaaatttggataag |
269 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
10328826 |
caaaacttggataag |
10328840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 30 - 268
Target Start/End: Complemental strand, 9044220 - 9043981
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||| |
|
|
| T |
9044220 |
ggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagaaatttttttgagtaaaagcaa |
9044121 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9044120 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatt |
9044021 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataa |
268 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9044020 |
tgggaattggaggataattaatgagtcaaaacttggataa |
9043981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 7473192 - 7473432
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
7473192 |
ggagagagcgacaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaa |
7473291 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7473292 |
tctaaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatt |
7473391 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
7473392 |
tgggaattggaggataactaatgagtcaaaacttggataag |
7473432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 30 - 265
Target Start/End: Original strand, 30442249 - 30442486
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnn-gagaaaaagca |
128 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
30442249 |
ggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttttgagtaaaagca |
30442348 |
T |
|
| Q |
129 |
atctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtggagtcaat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30442349 |
atctgaattccaacacataaagaaggaataatgagagtggagagaagagaactttaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaat |
30442448 |
T |
|
| Q |
228 |
ttaggaattggaggataattaatgagtcaaaatttgga |
265 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30442449 |
ttgggaattggaggataattaatgagtcaaaacttgga |
30442486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 22009359 - 22009455
Alignment:
| Q |
146 |
taaagaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggag |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | |||| |||||||||| |||| | ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
22009359 |
taaagaaggaataatgggagaggagagaacagaaagttgaaaaggaaggagaaaaaggttggcatcgataagtgtggagtcaatttgggaattggag |
22009455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 19085182 - 19085241
Alignment:
| Q |
183 |
aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggagga |
242 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||| | |||||||||||| |
|
|
| T |
19085182 |
aaaatggaggagaaagaggtgggtatcgataagtgtggagtcaatatgggaattggagga |
19085241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 1072 - 832
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
1072 |
ggagagagcggcaacggcagagaattttgtttaaatgtctgagagtgaggtggaagatgaacaactcaaagggagaagagatttttttgagtaaaagcaa |
973 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
972 |
tttgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatt |
873 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
872 |
tgggaattgaatgataattaatgagtcaaaatttggataag |
832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 31100575 - 31100815
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||| ||| ||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
31100575 |
ggagagagtggcgacggcaaagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaa |
31100674 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
31100675 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataagtgtggagtcaatt |
31100774 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31100775 |
tgggaattggaggataattaatgagtcaaaacttggataag |
31100815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 51 - 269
Target Start/End: Complemental strand, 5658168 - 5657949
Alignment:
| Q |
51 |
gaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaag |
150 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
5658168 |
gaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaattccaacacataaag |
5658069 |
T |
|
| Q |
151 |
aaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaa |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5658068 |
aaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataagtgtggagtcaatttgggaattggaggataattaa |
5657969 |
T |
|
| Q |
250 |
tgagtcaaaatttggataag |
269 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
5657968 |
tgagtcaaaacttggataag |
5657949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 14677725 - 14677964
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
|||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| |||||||| |
|
|
| T |
14677725 |
ggagagagcggcaacggcagaggattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaagagatttttttgagtaaaagcaa |
14677824 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14677825 |
tctgaatttcaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacat-gataagtgtggagtcaatt |
14677923 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
14677924 |
tgggaattggatgataattaatgagtcaaaacttggataag |
14677964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 33689028 - 33689215
Alignment:
| Q |
56 |
ttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaagga |
155 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
33689028 |
ttgtttgaatgtctaagagtgaggtggaagatgaacaactcaaaggg-gaagagatttttttgagtaaaagcaatctgaattccaaaaagtaaagaagga |
33689126 |
T |
|
| Q |
156 |
ataatgggagaggagagaagagaac-ttaa-aatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggagga |
242 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||||||||| | | |||||||||| |
|
|
| T |
33689127 |
ataatgggagaggagagaagagaacgttaacaatgaaggagaaagaggtgggtatggataagtgtggagtcaatatggaaattggagga |
33689215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 29863064 - 29863304
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| |||||||| |
|
|
| T |
29863064 |
ggagagagcggcagcgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaagagatttttttgagtaaaagcaa |
29863163 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29863164 |
tctgaattctaacacataaagaaggaataatgggagaggagataagagaactaaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatt |
29863263 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29863264 |
tgggaattggaggataattaatgagtcaaaacttggataag |
29863304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 33045141 - 33045374
Alignment:
| Q |
37 |
gcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaat |
136 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
33045141 |
gcggcgacgacaaagaattttgtttgaatgtctgagagtgaggttgaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaat |
33045240 |
T |
|
| Q |
137 |
tccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
33045241 |
tccaacacataaagaaggaataatgggagaggagacaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaat |
33045340 |
T |
|
| Q |
236 |
tggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
33045341 |
tggaggataattaatgagtcaaaacttggataag |
33045374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 10092908 - 10092678
Alignment:
| Q |
31 |
gagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaat |
130 |
Q |
| |
|
||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||| ||| ||||||||| |
|
|
| T |
10092908 |
gagagagcggcgacgttagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaacttaaaggg--aagagatttttttgagtaaaagcaat |
10092811 |
T |
|
| Q |
131 |
ctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaattt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10092810 |
ttgaattccaacacataaagaaggaataatgggagaggagagaa-----cttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaattt |
10092716 |
T |
|
| Q |
230 |
aggaattggaggataattaatgagtcaaaatttggata |
267 |
Q |
| |
|
| ||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
10092715 |
ggaaattggaggataactaatgaatcaaaacttggata |
10092678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 22001016 - 22001096
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagaga |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
22001016 |
ggagagagcggcaacgacagagaattttgtttgaatgtctgaaagtgaggtggaagatgaacaactcaaagggggaagaga |
22001096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 30908174 - 30908233
Alignment:
| Q |
183 |
aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggagga |
242 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||| | ||||||||||| |
|
|
| T |
30908174 |
aaaatggaggagaaagaggtgggtatcgataagtgtggagtcaatatgagaattggagga |
30908233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 11337 - 11577
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
||||||||||| || ||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||| |||| || ||| |||||||| |
|
|
| T |
11337 |
ggagagagcggtgacaacaaagaattttgtttgaatgtctgggagtgaggtggaagatgaacaactcaaagggggaagggatttgtttgagtaaaagcaa |
11436 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
11437 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcaataagtgtggagtcaatt |
11536 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| |||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
11537 |
tgggaattggaggataatgaatgagtcaaaacttggataag |
11577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 35479 - 35241
Alignment:
| Q |
30 |
ggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaa |
129 |
Q |
| |
|
||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| || || ||| |||||||| |
|
|
| T |
35479 |
ggagagagcagcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaaacgatttttttgagtaaaagcaa |
35380 |
T |
|
| Q |
130 |
tctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatt |
228 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
35379 |
tctgaattccaactcataaagaaggaataatgggagaggagag--gagaacttaaaaatgaaggagaaaaaggtggacatcgataagtgtggagttaatt |
35282 |
T |
|
| Q |
229 |
taggaattggaggataattaatgagtcaaaatttggataag |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35281 |
tgggaattggaggataattaatgagtcaaaacttggataag |
35241 |
T |
|
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