View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_46 (Length: 251)
Name: NF2445_low_46
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_46 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 35204689 - 35204594
Alignment:
| Q |
156 |
catagatgcagtagatgaagtggagggaaaacaaggagtaaatatccaattttgtccatagaattgtaagaccgtaacaactaaattcatcacatt |
251 |
Q |
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| T |
35204689 |
catagatgcagtagatgaagtggagggaaaacaaggagtaaatatccaattttgtccatagaattgtaagaccgtaacaactaaattcatcacatt |
35204594 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 35204835 - 35204745
Alignment:
| Q |
10 |
aataatattttgtatgaaatgcatgtagtggttggttatttgaagcttaaaaaggattatctgacagcgcttgagagtatgtataccttgg |
100 |
Q |
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| T |
35204835 |
aataatattttgtatgaaatgcatgtagtggttggttatttgaagcttaaaaaggattatttgacaccgcttgagagtatgtataccttgg |
35204745 |
T |
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