View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_4_N (Length: 648)
Name: NF2445_low_4_N
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_4_N |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 33 - 422
Target Start/End: Complemental strand, 54278478 - 54278089
Alignment:
| Q |
33 |
gttctccctctaaacgttgatcaatttggactcaatgggtaaacaagtttggtgtgtttgtgcctctactctttttattttatgctaatgctatggattg |
132 |
Q |
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| T |
54278478 |
gttctccctctaaacgttgatcaatttggactcaatgggtaaacaagtttggtgtgtttgtacctctactctttttattttatgctaatgctatggattg |
54278379 |
T |
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| Q |
133 |
atggtgtggtttcattatacacataggtcgctagatgtgtgtattgaatttattgttgcttagatcgttaaatttagtcgtcattaattgtttgtccgac |
232 |
Q |
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| T |
54278378 |
atggtgtggtttcattatacacataggtcgctagatgtgtgtattgaatttattgttgcttagatcgttaaatttagtcgtcattaattgtttgtccgac |
54278279 |
T |
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| Q |
233 |
acattttcttagcatgtttgattgaatttacaacatatttttgtacactaccacaataactaattcatctgagatacattttagagaaacttgttgaaaa |
332 |
Q |
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| T |
54278278 |
acattttcttagcatgtttgattgaatttacaacatatttttgtacactaccacaataactaattcatctgagatccattttagagaaacttgttgaaaa |
54278179 |
T |
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| Q |
333 |
tagaaaatcaaattaacagcgtgtacttcttttgcgtatagcaaaatagttaatattattgaattgaagacattacaataacattgcttc |
422 |
Q |
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| T |
54278178 |
tagaaaatcaaattaacaacgtgtacttcttttgcgtatagcaaaatagttaatattattgaattgaagacattacaataacattgcttc |
54278089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 487 - 634
Target Start/End: Complemental strand, 54278024 - 54277874
Alignment:
| Q |
487 |
tatgagattcaattga---acgatgtatgaagttaaatcttatttctttttagtgggataagaagccatcttgtagagtccacaaatcccttcagacttt |
583 |
Q |
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| T |
54278024 |
tatgagattcaattgatcaacgatgtatgaagttaaatcttatttctttttagtgggataagaagccatcttgtagagtccacaaatcccttcagacttt |
54277925 |
T |
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| Q |
584 |
ccaatgtttctcttcatcctaataaaccctttctcaccccactttgctccc |
634 |
Q |
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| T |
54277924 |
ccaatgtttctcttcatcctaataaaccctttctcaccccactttgctccc |
54277874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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