View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_5 (Length: 613)
Name: NF2445_low_5
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 30 - 604
Target Start/End: Complemental strand, 10086665 - 10086091
Alignment:
| Q |
30 |
aaaccttacattgtaattatataactttttcaaaat-atattctttcattctctttcaatagttagaatcatgcgtgttggaaagtagtctttactaaat |
128 |
Q |
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| T |
10086665 |
aaaccttacattgtaattatataactttttcaaaaagatattctttcattctctttcaatagttagaatcatgcgtgttggaaagtagtctttactaaat |
10086566 |
T |
|
| Q |
129 |
caaatacgtaattaactttaatacgaattacacccatatatactcaatttcttttttcacaaagcaaaaca-tttattatttgataaggtatatataatc |
227 |
Q |
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|| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |
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| T |
10086565 |
catatacgtaattaactttaatacgaattacact-acatatactcaatttcttttttcacaaaccaaaacaatttattatt-gataaggtatatataatc |
10086468 |
T |
|
| Q |
228 |
aaaggcaagtcacgatatatacgccagatcattcctatttattgataaggaaaaattataaagtagcaaaatataacacttctttctttttaattgaaaa |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10086467 |
aaaggcaagtcacgatatatacgccagatcattcctatttattgatatggaaaaattataaagtagcaaaatataacacttctttctttttaattgaaaa |
10086368 |
T |
|
| Q |
328 |
aatggaaaagagaatcaaatagaatattatactaagacattgtattatatatcatttgtcatggtttcttaatcaggataatataacaatcgtgtttgct |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10086367 |
aatggaaaagagaatcaaatagaatattatactaagacattgtattatatatcatttgtcatggtttcttaattaggataatataacaatcgtgtttgct |
10086268 |
T |
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| Q |
428 |
accttgttaacttaaatacaaaacaaaacaccttaacttaatcctatatcctatgatgcattgtgatcaacacgttataacatttaatattcctttccat |
527 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10086267 |
accttgttaacttaaatacaaaacaaaacacctcaacttaatcctatattctatgatgcattgtgatcaacacgttataacatttaatattcctttccat |
10086168 |
T |
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| Q |
528 |
ttcaatataaacatataatattccttttatttgtttgaaagtttcattcccattaagcatgcagagataagtataat |
604 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
10086167 |
ttcaatataaacatataatattccttttatttgtttaaaagtttcatgcccattaagcatgcagagataagtataat |
10086091 |
T |
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