View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2445_low_50 (Length: 247)

Name: NF2445_low_50
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2445_low_50
NF2445_low_50
[»] chr3 (12 HSPs)
chr3 (16-148)||(21193417-21193549)
chr3 (175-243)||(21193988-21194056)
chr3 (175-216)||(4015840-4015881)
chr3 (175-207)||(29099728-29099760)
chr3 (175-207)||(36012521-36012553)
chr3 (175-207)||(11467191-11467223)
chr3 (175-207)||(33378548-33378580)
chr3 (175-207)||(37158089-37158121)
chr3 (175-207)||(37203449-37203481)
chr3 (175-207)||(39283033-39283065)
chr3 (164-204)||(46297901-46297941)
chr3 (164-216)||(53811978-53812030)
[»] chr4 (10 HSPs)
chr4 (175-214)||(7703899-7703938)
chr4 (175-207)||(4598372-4598404)
chr4 (172-215)||(30002422-30002465)
chr4 (175-213)||(19440431-19440469)
chr4 (175-216)||(37776048-37776089)
chr4 (175-207)||(4205374-4205406)
chr4 (175-207)||(23431945-23431977)
chr4 (175-207)||(34361280-34361312)
chr4 (164-204)||(35021200-35021240)
chr4 (175-207)||(49376357-49376389)
[»] chr5 (13 HSPs)
chr5 (172-212)||(42343108-42343148)
chr5 (175-214)||(11898205-11898244)
chr5 (175-205)||(22020013-22020043)
chr5 (175-216)||(19120249-19120290)
chr5 (175-212)||(25500674-25500711)
chr5 (175-204)||(26269199-26269228)
chr5 (175-207)||(9200614-9200646)
chr5 (164-204)||(22616500-22616540)
chr5 (171-207)||(25889756-25889792)
chr5 (175-207)||(28416304-28416336)
chr5 (175-207)||(32563530-32563562)
chr5 (175-207)||(35511235-35511267)
chr5 (175-207)||(39573201-39573233)
[»] chr2 (5 HSPs)
chr2 (172-207)||(33660158-33660193)
chr2 (172-207)||(27349734-27349769)
chr2 (16-102)||(19923310-19923396)
chr2 (175-212)||(19424418-19424455)
chr2 (175-207)||(3177329-3177361)
[»] chr1 (7 HSPs)
chr1 (172-207)||(48620972-48621007)
chr1 (175-215)||(34012132-34012172)
chr1 (175-212)||(27532735-27532772)
chr1 (175-204)||(38823600-38823629)
chr1 (175-207)||(14758418-14758450)
chr1 (175-207)||(31963003-31963035)
chr1 (175-207)||(48353928-48353960)
[»] chr7 (6 HSPs)
chr7 (16-69)||(2213998-2214051)
chr7 (175-212)||(6546884-6546921)
chr7 (175-212)||(15612518-15612555)
chr7 (175-207)||(24212107-24212139)
chr7 (175-207)||(26980671-26980703)
chr7 (175-207)||(32432817-32432849)
[»] chr8 (7 HSPs)
chr8 (172-207)||(34951826-34951861)
chr8 (177-207)||(7998558-7998588)
chr8 (175-208)||(466221-466254)
chr8 (175-207)||(5299715-5299747)
chr8 (175-207)||(7890726-7890758)
chr8 (175-207)||(16446644-16446676)
chr8 (175-207)||(38644367-38644399)
[»] scaffold0318 (1 HSPs)
scaffold0318 (175-207)||(12298-12330)
[»] chr6 (1 HSPs)
chr6 (175-207)||(1946226-1946258)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 21193417 - 21193549
Alignment:
Q  16 atatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttgcacaatggggactgcttgtccagttcggaagcaagtatatacaatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21193417 atatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttgcacaatggggactgcttgtccagttcggaagcaagtatatacaatc 21193516  T
Q  116 tctctaccttttatgaaatttgattacatactt 148  Q
    |||||||||||||||||||||||||||||||||    
T  21193517 tctctaccttttatgaaatttgattacatactt 21193549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 21193988 - 21194056
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccataaaacaaactcttccggggtggcttttaaag 243  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||  |||||||||||||||    
T  21193988 aaaagtcagtttcatgactgcaccgtagaagctcccataaaataaactcttcgagggtggcttttaaag 21194056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 4015840 - 4015881
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccataaaa 216  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  4015840 aaaagtcagtttcatgactgcaccgtagaagctcccaaaaaa 4015881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 29099728 - 29099760
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||||||||||||||||||||||||||||||    
T  29099728 aaaagtcagtttcatgactgcaccgtagaagct 29099760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 36012521 - 36012553
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||||||||||||||||||||||||||||||    
T  36012521 aaaagtcagtttcatgactgcaccgtagaagct 36012553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 11467191 - 11467223
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||||||||| ||||||||||||||||||||    
T  11467191 aaaagtcagtttgatgactgcaccgtagaagct 11467223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 33378580 - 33378548
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  33378580 aaaagtcagtttcctgactgcaccgtagaagct 33378548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 37158089 - 37158121
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  37158089 aaaagtcagtttcctgactgcaccgtagaagct 37158121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 37203449 - 37203481
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  37203449 aaaagtcagtttcctgactgcaccgtagaagct 37203481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 39283033 - 39283065
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  39283033 aaaagtcagtttcctgactgcaccgtagaagct 39283065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 46297901 - 46297941
Alignment:
Q  164 aacttcaccagaaaagtcagtttcatgactgcaccgtagaa 204  Q
    ||||||||||||||||||| |||||||||| |||| |||||    
T  46297901 aacttcaccagaaaagtcattttcatgacttcaccatagaa 46297941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 53811978 - 53812030
Alignment:
Q  164 aacttcaccagaaaagtcagtttcatgactgcaccgtagaagcttccataaaa 216  Q
    ||||||| ||||||||||| | |||||||| ||||||||||  ||||||||||    
T  53811978 aacttcatcagaaaagtcattctcatgacttcaccgtagaattttccataaaa 53812030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 7703899 - 7703938
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccataa 214  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7703899 aaaagtcagtttcatgactgcaccgtagaagcttccataa 7703938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 4598372 - 4598404
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||||||||||||||||||||||||||||||    
T  4598372 aaaagtcagtttcatgactgcaccgtagaagct 4598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 30002465 - 30002422
Alignment:
Q  172 cagaaaagtcagtttcatgactgcaccgtagaagcttccataaa 215  Q
    ||||||||||| |||||| ||||||||||||||||| |||||||    
T  30002465 cagaaaagtcaatttcataactgcaccgtagaagctcccataaa 30002422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 19440469 - 19440431
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccata 213  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  19440469 aaaagtcagtttcctgactgcaccgtagaagctcccata 19440431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 37776048 - 37776089
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccataaaa 216  Q
    |||||||| |||||||||||||||||||||||| | ||||||    
T  37776048 aaaagtcaatttcatgactgcaccgtagaagctccaataaaa 37776089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 4205374 - 4205406
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  4205374 aaaagtcagtttcttgactgcaccgtagaagct 4205406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 23431945 - 23431977
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||||||||||||| |||||||||    
T  23431945 aaaagtcagtttcatgactgcactgtagaagct 23431977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 34361312 - 34361280
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  34361312 aaaagtcagtttcctgactgcaccgtagaagct 34361280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 35021200 - 35021240
Alignment:
Q  164 aacttcaccagaaaagtcagtttcatgactgcaccgtagaa 204  Q
    ||||||||||||||||||| |||||||||| |||| |||||    
T  35021200 aacttcaccagaaaagtcattttcatgacttcaccatagaa 35021240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 49376357 - 49376389
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  49376357 aaaagtcagtttcctgactgcaccgtagaagct 49376389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 42343108 - 42343148
Alignment:
Q  172 cagaaaagtcagtttcatgactgcaccgtagaagcttccat 212  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  42343108 cagaaaagtcagtttcatgactgcaccgtagaagctcccat 42343148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 11898205 - 11898244
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccataa 214  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  11898205 aaaagtcagtttcctgactgcaccgtagaagctcccataa 11898244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 22020013 - 22020043
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaag 205  Q
    |||||||||||||||||||||||||||||||    
T  22020013 aaaagtcagtttcatgactgcaccgtagaag 22020043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 19120249 - 19120290
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccataaaa 216  Q
    |||||||||||||||||||||||| |||||||| || |||||    
T  19120249 aaaagtcagtttcatgactgcaccttagaagctcccttaaaa 19120290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 25500711 - 25500674
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccat 212  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  25500711 aaaaatcagtttcatgactgcaccgtagaagctcccat 25500674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 26269199 - 26269228
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaa 204  Q
    ||||||||||||||||||||||||||||||    
T  26269199 aaaagtcagtttcatgactgcaccgtagaa 26269228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 9200614 - 9200646
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||| ||||||||||||||||||||||||||||    
T  9200614 aaaaatcagtttcatgactgcaccgtagaagct 9200646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 22616540 - 22616500
Alignment:
Q  164 aacttcaccagaaaagtcagtttcatgactgcaccgtagaa 204  Q
    ||||||||||||||||||| |||||||||| |||| |||||    
T  22616540 aacttcaccagaaaagtcattttcatgacttcaccatagaa 22616500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 25889756 - 25889792
Alignment:
Q  171 ccagaaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  25889756 ccagaaaagtcagtttcctgactgcatcgtagaagct 25889792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 28416336 - 28416304
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||| |||||||||||||||||||||||    
T  28416336 aaaagtcagcttcatgactgcaccgtagaagct 28416304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 32563530 - 32563562
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||||| |||||||||||||||||    
T  32563530 aaaagtcagtttcataactgcaccgtagaagct 32563562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 35511267 - 35511235
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  35511267 aaaagtcagtttcctgactgcaccgtagaagct 35511235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 39573201 - 39573233
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||||| |||||||||||||||||    
T  39573201 aaaagtcagtttcataactgcaccgtagaagct 39573233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 33660193 - 33660158
Alignment:
Q  172 cagaaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  33660193 cagaaaagtcagtttcatgactgcaccgtagaagct 33660158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 27349769 - 27349734
Alignment:
Q  172 cagaaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||||||||||||||||||||||| |||||||||    
T  27349769 cagaaaagtcagtttcatgactgcactgtagaagct 27349734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 19923310 - 19923396
Alignment:
Q  16 atatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttgcacaatggggactgcttgtccagttcggaagca 102  Q
    ||||||||| |||| ||| ||||||||||| |||||| |||| || ||||||||||  ||||| ||| | || |||||||| |||||    
T  19923310 atatggacaaaagacggccaagggaaacccttgtccacgagcctactatcgttgcagtatgggaacttcatgcccagttcgaaagca 19923396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 19424455 - 19424418
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccat 212  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  19424455 aaaagtcagtttgatgactgcaccgtagaagctcccat 19424418  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 3177329 - 3177361
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  3177329 aaaagtcagtttcctgactgcaccgtagaagct 3177361  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 48620972 - 48621007
Alignment:
Q  172 cagaaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  48620972 cagaaaagtcagtttcatgactgcaccgtagaagct 48621007  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 34012172 - 34012132
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccataaa 215  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  34012172 aaaagtcagtttcctgactgcaccgtagaagctcccataaa 34012132  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 27532772 - 27532735
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccat 212  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  27532772 aaaaatcagtttcatgactgcaccgtagaagctcccat 27532735  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 38823600 - 38823629
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaa 204  Q
    ||||||||||||||||||||||||||||||    
T  38823600 aaaagtcagtttcatgactgcaccgtagaa 38823629  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 14758418 - 14758450
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  14758418 aaaagtcagtttcgtgactgcaccgtagaagct 14758450  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 31963003 - 31963035
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||||| |||||||||||||||||    
T  31963003 aaaagtcagtttcataactgcaccgtagaagct 31963035  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 48353928 - 48353960
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||| ||||||||||||||||||||||||||||    
T  48353928 aaaaatcagtttcatgactgcaccgtagaagct 48353960  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2213998 - 2214051
Alignment:
Q  16 atatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttg 69  Q
    ||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  2213998 atatggacaaaagatagcaaaaggaaatccatgtccaagagcttactatcgttg 2214051  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 6546884 - 6546921
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccat 212  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  6546884 aaaagtcagtttcatgactgcaccgtagaagctcccat 6546921  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 15612555 - 15612518
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagcttccat 212  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  15612555 aaaagtcagtttcatgactgcaccgtagaagctcccat 15612518  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 24212107 - 24212139
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  24212107 aaaagtcagtttcctgactgcaccgtagaagct 24212139  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 26980671 - 26980703
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||||||||||||||||||||| ||||||||    
T  26980671 aaaagtcagtttcatgactgcaccttagaagct 26980703  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 32432817 - 32432849
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  32432817 aaaagtcagtttcctgactgcaccgtagaagct 32432849  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 34951861 - 34951826
Alignment:
Q  172 cagaaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||||||||||||||||| |||||||||||||||    
T  34951861 cagaaaagtcagtttcatgattgcaccgtagaagct 34951826  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Original strand, 7998558 - 7998588
Alignment:
Q  177 aagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||||||||||||||||||||||||||||    
T  7998558 aagtcagtttcatgactgcaccgtagaagct 7998588  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 466221 - 466254
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagctt 208  Q
    |||| |||||||||||||||||||||||||||||    
T  466221 aaaaatcagtttcatgactgcaccgtagaagctt 466254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 5299747 - 5299715
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||||||||||||||||||||| ||||||||    
T  5299747 aaaagtcagtttcatgactgcaccatagaagct 5299715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 7890758 - 7890726
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||||||||||||||| ||||||||||||||    
T  7890758 aaaagtcagtttcatgaccgcaccgtagaagct 7890726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 16446676 - 16446644
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  16446676 aaaagtcagtttcctgactgcaccgtagaagct 16446644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 38644367 - 38644399
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||||||||||||||||| |||||    
T  38644367 aaaagtcagtttcatgactgcaccgtaaaagct 38644399  T

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Target: scaffold0318 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 12298 - 12330
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    |||||| ||||||||||||||||||||||||||    
T  12298 aaaagtaagtttcatgactgcaccgtagaagct 12330  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 1946226 - 1946258
Alignment:
Q  175 aaaagtcagtttcatgactgcaccgtagaagct 207  Q
    ||||||||||||| |||||||||||||||||||    
T  1946226 aaaagtcagtttcctgactgcaccgtagaagct 1946258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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