View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_6 (Length: 591)
Name: NF2445_low_6
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 30 - 585
Target Start/End: Complemental strand, 43460024 - 43459469
Alignment:
| Q |
30 |
gcaaacagtttcaaacatttccatgttggaacacagcttcaaaatgaactatctctaccatttgacaagtcaacaggacatagagcatctcttgttttca |
129 |
Q |
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| T |
43460024 |
gcaaacagtttcaaacatttccatgttggaacacagcttcaaaatgaactatctctaccatttgacaagtcaacaggacatagagcatctcttgttttca |
43459925 |
T |
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| Q |
130 |
agagatacactgtctctaaaatgggacttctcaaagcatgttgggacaaagaatgccttttaataaagagaaactcttttatttacatattcaagtcagt |
229 |
Q |
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| T |
43459924 |
agagatacactgtctctaaaatgggacttctcaaagcatgttgggacaaagaatgccttttaataaagagaaactcttttatttacatattcaagtcagt |
43459825 |
T |
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| Q |
230 |
tcaaatatgcattattgctgtgatatgtggaacagtttttataaggactaaaatgcatcaaagaaatgagggtgatgcatctgtttatattggtgcaatt |
329 |
Q |
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| T |
43459824 |
tcaaatatgcattattgctgtgatatgtggaacagtttttataaggactaaaatgcatcaaagaaatgagggtgatgcatctgtttatattggtgcaatt |
43459725 |
T |
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| Q |
330 |
ttgtttactatgattatgaacatgttcaatggtttctctgagttgccactcacaattgcaagacttcctgtgttctacaaacatagagatcacctttttc |
429 |
Q |
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| T |
43459724 |
ttgtttactatgattatgaacatgttcaatggtttctctgagttgccactcacaattgcaagacttcctgtgttctacaaacatagagatcacctttttc |
43459625 |
T |
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| Q |
430 |
atcctccatggacttacactctccctaattttcttctaaggattcctatttccatttttgaggctatagtttgggttcttattacatattacacaattgg |
529 |
Q |
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| T |
43459624 |
atcctccatggacttacactctccctaattttcttctaaggattcctatttccatttttgaggctatagtttgggttcttattacatattacacaattgg |
43459525 |
T |
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| Q |
530 |
atttgcacctgaagctagtaggtaaactcaatcaccttaactcttatattcttcga |
585 |
Q |
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| T |
43459524 |
atttgcacctgaagctagtaggtaaactcaatcaccttaactcgtatatttttcga |
43459469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 319 - 448
Target Start/End: Original strand, 4499424 - 4499553
Alignment:
| Q |
319 |
ttggtgcaattttgtttactatgattatgaacatgttcaatggtttctctgagttgccactcacaattgcaagacttcctgtgttctacaaacatagaga |
418 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||| |||| | |||| |||||| ||| ||||||||||| || ||||| ||||| |
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| T |
4499424 |
ttggtgcgattttgttcgctatgattatgaacatgttcaatggttttgctgaacttgcactaacaattcaaaggcttcctgtgttttataaacaaagaga |
4499523 |
T |
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| Q |
419 |
tcacctttttcatcctccatggacttacac |
448 |
Q |
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| T |
4499524 |
tcaccttttccatcctgcttggacttacac |
4499553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 4499267 - 4499353
Alignment:
| Q |
162 |
aaagcatgttgggacaaagaatgccttttaataaagagaaactcttttatttacatattcaagtcagttcaaatatgcattattgct |
248 |
Q |
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||||||||||||||||||||||| || | || || |||||||| ||| | ||||| |||||| ||| |||||| ||||| |||||| |
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| T |
4499267 |
aaagcatgttgggacaaagaatggctacttatcaaaagaaactcctttgtctacattttcaagacagctcaaatttgcatcattgct |
4499353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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