View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2445_low_9 (Length: 473)
Name: NF2445_low_9
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 24 - 455
Target Start/End: Original strand, 43172762 - 43173192
Alignment:
| Q |
24 |
gaacaactaatcccacagtgactttgtattttaaaaatacagttaattatttttcatttagannnnnnngattgattgatttgaatcacatcaaacaaaa |
123 |
Q |
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| T |
43172762 |
gaacaactaatcccacagtgactttgtattttaaaaatacagttaattatttttcatttagatttttttgattgattgatttgaatcacttcaaacaaaa |
43172861 |
T |
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| Q |
124 |
ccacgaattttattatttttctctttcatgtgatcatggtctaaattcgagaaggagaacaccaagctgaagcagccgaaacctaattcccttcttgtag |
223 |
Q |
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| T |
43172862 |
ccacgaattttattatttttctctttcatgtgatcatggtctaaattcgagaaggagaagactaagctgaagcagccgaaacctaattcccttcttgtag |
43172961 |
T |
|
| Q |
224 |
aatattacacatcattgacagnnnnnnngtgtgtgtgtaaattagtatcattttcacgcgcaactgtaaagattaatctcttgaactttatgagacccaa |
323 |
Q |
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| T |
43172962 |
aatattacacatcattgacagttttttt-tgtgtgtgtaaattagtatcatttgcacgcgcaactgcaaagattaatctcttgaactttatgagacccaa |
43173060 |
T |
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| Q |
324 |
atgagcggtgaactttcacaaaaaattttaatgttgttgcatgcctacggctagattcgaacctagactttggttaagttataagagacacgtgtaatat |
423 |
Q |
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| T |
43173061 |
atgagcggtgaactttcacaaaaagttttaatgttgttgcatgcctacggctagattcgaacctagactttggttaagttataagagacacatgtaatat |
43173160 |
T |
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| Q |
424 |
catctaaacttttctatgtacaaatcattgac |
455 |
Q |
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| T |
43173161 |
catctaaacttttctaggtacaaatcattgac |
43173192 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 412
Target Start/End: Complemental strand, 7157571 - 7157507
Alignment:
| Q |
349 |
ttttaatgttgttgcatgcctacggctagattcgaaccta-gactttggttaagttataagagac |
412 |
Q |
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|||||| |||| |||||||| | ||||||||||||||||| || |||||||||||| ||||||| |
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| T |
7157571 |
ttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagac |
7157507 |
T |
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