View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2446_high_1 (Length: 408)
Name: NF2446_high_1
Description: NF2446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2446_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 45466138 - 45466520
Alignment:
| Q |
16 |
gaaagtgcttccggtgatacgaattttcaagcattgaagacttatggtagagatttggttgaacaagcagggaagcttgatcctgttattggacgcgacg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45466138 |
gaaagtgcttccggtgatacgaattttcaagcattgaagacttatggtagagatttggttgaacaagcagggaagcttgatcctgttattggacgcgacg |
45466237 |
T |
|
| Q |
116 |
aagagattcgaagagttgtgaggattttgtcaaggaggactaagaataatccagttcttattggtgagcctggtgttgggaaaactgctgttgttgaagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45466238 |
aagagattcgaagagttgtgaggattttgtcaaggaggactaagaataatccagttcttattggtgagcctggtgttgggaaaactgctgttgttgaagg |
45466337 |
T |
|
| Q |
216 |
gttggctcagaggattgttagaggtgatgttcctagcaatcttgctgatgttaggttaattgctctggatatgggagcattggttgctggtgcgaagtat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45466338 |
gttggctcagaggattgttagaggtgatgttcctagcaatcttgctgatgttaggttaattgctctggatatgggagcattggttgctggtgcgaagtat |
45466437 |
T |
|
| Q |
316 |
aggggagaatttgaagagaggttgaaggctgttttgaaagaagttgaagaagctgaagggaaggttattctttttattgatga |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45466438 |
aggggagaatttgaagagaggttgaaggctgttttgaaagaagttgaagaagctgaagggaaggttattcttttcattgatga |
45466520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 44 - 398
Target Start/End: Original strand, 10044054 - 10044408
Alignment:
| Q |
44 |
aagcattgaagacttatggtagagatttggttgaacaagcagggaagcttgatcctgttattggacgcgacgaagagattcgaagagttgtgaggatttt |
143 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
10044054 |
aagcgttgaaaacttatggtagagacttggtcgaacaagcagggaaacttgatcctgttattggacgcgatgaagagataagaagggttgtgaggatttt |
10044153 |
T |
|
| Q |
144 |
gtcaaggaggactaagaataatccagttcttattggtgagcctggtgttgggaaaactgctgttgttgaagggttggctcagaggattgttagaggtgat |
243 |
Q |
| |
|
||||| ||||| ||||| ||||| ||| |||| |||||||| |||||||| ||||| ||||||||||||||| ||||| |||| || |||||||| ||| |
|
|
| T |
10044154 |
atcaagaaggacaaagaacaatcctgttattataggtgagccaggtgttggtaaaacagctgttgttgaagggctggctaagagaatagttagaggagat |
10044253 |
T |
|
| Q |
244 |
gttcctagcaatcttgctgatgttaggttaattgctctggatatgggagcattggttgctggtgcgaagtataggggagaatttgaagagaggttgaagg |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||| || || |||||| | ||||||||||| |||||||| | |||||||||| |
|
|
| T |
10044254 |
gttcctagcaatcttgctgatgttaggttatttgctttggatatgggagcgttagtcgctggtactcagtataggggacaatttgaacaaaggttgaagg |
10044353 |
T |
|
| Q |
344 |
ctgttttgaaagaagttgaagaagctgaagggaaggttattctttttattgatga |
398 |
Q |
| |
|
| |||||||||||||| ||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
10044354 |
cagttttgaaagaagtggaagatgctgaagggaaggttattgttttcattgatga |
10044408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 49012865 - 49012804
Alignment:
| Q |
157 |
aagaataatccagttcttattggtgagcctggtgttgggaaaactgctgttgttgaagggtt |
218 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
49012865 |
aagaataatccagttattattggtgaacctggtgtggggaaaactgcaattgctgaagggtt |
49012804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University