View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2446_low_1 (Length: 549)
Name: NF2446_low_1
Description: NF2446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2446_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 42273707 - 42274219
Alignment:
| Q |
18 |
ccattatgtcttgaatttttctctattgacgttttgttttgtaattaattggtttttcttgtggcaattgaacagaggcacccctcaaattgaagtcacc |
117 |
Q |
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| T |
42273707 |
ccattatgtcttgaatttttctctattgacgttttgttttgtaattaattggtttttcttgtggcaattgaacagaggcacccctcaaattgaagtcacc |
42273806 |
T |
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| Q |
118 |
tttgaagttgatgcaaatggtatcttaaatgtaaaggcagaagacaagggcactggtaaatcagaaaagatcaccattacaaatgaaaagggacgtctaa |
217 |
Q |
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| T |
42273807 |
tttgaagttgatgcaaatggtatcttaaatgtaaaggcagaagacaagggcaccggtaaatcagaaaagatcaccattacaaatgaaaagggacgtctaa |
42273906 |
T |
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| Q |
218 |
gccaggaggaaatcgaacggatggttcgtgaagcagaggagtttgccgaggaggataaaaaggtcaaggaaagaattgacgctcggaatgctctggaaac |
317 |
Q |
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| T |
42273907 |
gccaggaggaaatcgaacggatggttcgtgaagcagaggagtttgccgaggaggataaaaaggtcaaggaaagaattgacgctcggaatgctctggaaac |
42274006 |
T |
|
| Q |
318 |
ctatgtctacaacatgaaaaaccaagtcagtgacaaagacaagctggctgacaagttggagtcagatgaaaaggagaaaatcgagaccgctgttaaggaa |
417 |
Q |
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| T |
42274007 |
ctatgtctacaacatgaaaaaccaagtcagtgacaaagacaagctggctgacaagttggagtcagatgaaaaggagaaaatcgagaccgctgttaaggaa |
42274106 |
T |
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| Q |
418 |
gcattggaatggttggatgacaaccagagcgtagagaaagaagaatatgaagagaagctcaaagaagtggaagctgtttgtaatccaatcatcaccgcag |
517 |
Q |
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| T |
42274107 |
gcattggaatggttggatgacaaccagagcgtagagaaagaagaatatgaagagaagctcaaagaagtggaagctgtttgtaatccaatcatcaccgcag |
42274206 |
T |
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| Q |
518 |
tctatcagagatc |
530 |
Q |
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| T |
42274207 |
tctatcagagatc |
42274219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 56 - 512
Target Start/End: Original strand, 42325880 - 42326336
Alignment:
| Q |
56 |
ttgtaattaattggtttttcttgtggcaattgaacagaggcacccctcaaattgaagtcacctttgaagttgatgcaaatggtatcttaaatgtaaaggc |
155 |
Q |
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| T |
42325880 |
ttgtaattaattgatttttcttgtggtaattgaacagaggtacccctcaaattgaagtgacctttgaagtagatgcaaacggtattctaaatgtcagggc |
42325979 |
T |
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| Q |
156 |
agaagacaagggcactggtaaatcagaaaagatcaccattacaaatgaaaagggacgtctaagccaggaggaaatcgaacggatggttcgtgaagcagag |
255 |
Q |
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| T |
42325980 |
agaagacaagggcacaggtaaatcagaaaagatcaccattacaaatgaaaagggacgcctgagtcaggaggaaattgaccggatggttcgtgaagccgag |
42326079 |
T |
|
| Q |
256 |
gagtttgccgaggaggataaaaaggtcaaggaaagaattgacgctcggaatgctctggaaacctatgtctacaacatgaaaaaccaagtcagtgacaaag |
355 |
Q |
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| T |
42326080 |
gagtttgccgaggaagacaagaaagtgaaggaaagaattgatgctcggaatgctcttgaaacctatgtctacaacatgaaaaaccaaatcagcgacaagg |
42326179 |
T |
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| Q |
356 |
acaagctggctgacaagttggagtcagatgaaaaggagaaaatcgagaccgctgttaaggaagcattggaatggttggatgacaaccagagcgtagagaa |
455 |
Q |
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|||| || |||||||||||||| |||||||||||||| ||||| ||| |||| || || |||||| | |||||| ||||||||||||| | || ||||| |
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| T |
42326180 |
acaaacttgctgacaagttggaatcagatgaaaaggaaaaaattgaggccgcggtgaaagaagcacttgaatggctggatgacaaccaaactgttgagaa |
42326279 |
T |
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| Q |
456 |
agaagaatatgaagagaagctcaaagaagtggaagctgtttgtaatccaatcatcac |
512 |
Q |
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|||||| | ||||||||||| |||||||| ||||| ||||| || ||||| ||||| |
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| T |
42326280 |
agaagagttcgaagagaagcttaaagaagttgaagccgtttgcaacccaattatcac |
42326336 |
T |
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