View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2446_low_2 (Length: 535)
Name: NF2446_low_2
Description: NF2446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2446_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Original strand, 54183671 - 54184169
Alignment:
| Q |
19 |
aactagaaaataaccttggttgcgagttgaacagctacaacatcagaaaaagaagactctctagcattactggcataggtaatgcatgaagttgatttta |
118 |
Q |
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| T |
54183671 |
aactagaaaataaccttggttgcgagttgagcagctacaacatcagaaaaagaagactctctagcattactggcataggtaatgcatgaagttgatttta |
54183770 |
T |
|
| Q |
119 |
gtccactgaattcagccacctcaagtctctgcacaagcaaagtaaagtgaagtataagacacttttaattaaaatatgaaacaaaagcaatcatgaagga |
218 |
Q |
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| T |
54183771 |
gtccactgaattcagccacctcaagtctctgcacaagcaaagtaaagtgaagtataagacacttttaattaaaatatgaaacaaa-gcaatcatgaagga |
54183869 |
T |
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| Q |
219 |
cacaactttagagagagtgaaacctttgaggcacattgagttgggaaagagtgggaggcctttgatggaaaccttgtgcttgtagggattcttgtagaag |
318 |
Q |
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| T |
54183870 |
cacaactttagagagagtgaaacctttgaggcacattgagttgggaaagagtgggaggcctttgatggaaaccttgtgcttgtagggattcttgtagaag |
54183969 |
T |
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| Q |
319 |
ctaaagctgcatgagtggccatagctatagatgcaaccaagctgaaaaacaactctttgctgagtgtttattatattcacaatgaaaattatggttgatg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54183970 |
ctaaagctgcatgagtggccatagctatagatgcaaccaagctgaaaaacaactctttgctgagtgtttattatattcacaatgaaaattctggttgatg |
54184069 |
T |
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| Q |
419 |
aatgagtggttaatatcttgagaaaaagaaaattatggttgctgggggagtaatggaatgagtggtgaataatttgtaagaatatctacaagataagata |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54184070 |
aatgagtggttaatatcttgagaaaaagaaaattatggttgctgggggagtaatggaatgagtggtgaataatttgtaagaatatctacaagataagata |
54184169 |
T |
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