View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2446_low_4 (Length: 348)
Name: NF2446_low_4
Description: NF2446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2446_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 26733710 - 26733358
Alignment:
| Q |
1 |
tgaaaatttccagtctttgagtgcatcatctttggctttctttcctttcattgannnnnnnagctttagcaacgcatcaagatcattatttaatgaataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26733710 |
tgaaaatttccagtctttgagtgcatcatctttggctttctctcctttcattgatttttttagctttagcaacgcatcaagatcattatttaatgaataa |
26733611 |
T |
|
| Q |
101 |
cacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctcagttttgtacctatgaattggtttgcaatgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26733610 |
cacgttgtaaataacatgcacaatagtagcaaataacatgtgatgtttttcatctttctcttttgctcagttttgtacctatgaattggtttgcaatgtt |
26733511 |
T |
|
| Q |
201 |
tgcattgggtgtatttaatttctctttttggtaccaca-----ctcacactacatgcagtgattgcattctgtatttataataagtacaattatagttaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26733510 |
tgcattgggtgtatttaatttctctttttggtaccacaccactctcacactacatgcagtgattgcattctgtatttataataagtacaattatagttaa |
26733411 |
T |
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| Q |
296 |
tttaattgatgttatcttattggttaacatatggtagagtggagtataatctt |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26733410 |
tttaattgatgttatcttattggttaacatatggtagagtggagtataatctt |
26733358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 26725396 - 26725058
Alignment:
| Q |
1 |
tgaaaatttccagtctttgagtgcatcatctttggctttctttcctttcattgannnnnnnagctttagcaacgcatcaagatcattatttaatgaataa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26725396 |
tgaaaatttccagtctttgagtgcatcatctttggctttctctcctttcattgatttttttagctttagcaacgcatcaagatcattatttaatgaataa |
26725297 |
T |
|
| Q |
101 |
cacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctcagttttgtacctatgaattggtttgcaatgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26725296 |
cacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctaagttttgtacctatgaattggtttgcaatgtt |
26725197 |
T |
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| Q |
201 |
tgcattgggtgtatttaatttctctttttggtaccacactcacactacatgcagtgattgcattctgtatttataataagtacaattatagttaatttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26725196 |
tgcattgggtgtatttaatttctctttttggtaccacactcacactacatgcagtgattgcattctatatttataataagtacaattatagttaatttaa |
26725097 |
T |
|
| Q |
301 |
ttgatgttatcttattggttaacatatggtagagtggag |
339 |
Q |
| |
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||||| |||||||||| ||| ||||||||| |||||||| |
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| T |
26725096 |
ttgatattatcttatttgttcacatatggtggagtggag |
26725058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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