View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2446_low_6 (Length: 265)
Name: NF2446_low_6
Description: NF2446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2446_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 4195614 - 4195847
Alignment:
| Q |
18 |
aacacattaaagttactcctccatcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4195614 |
aacacattaaagttactcctccatcatcaacccaaaaaaca---acaacccctcttacttactttgacatattttggcttaggttccatccggtagaacg |
4195710 |
T |
|
| Q |
118 |
tgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4195711 |
tgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaa |
4195810 |
T |
|
| Q |
218 |
cactttcttcctttagctggtaaactcgtttggcctt |
254 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4195811 |
cactttcttcctttagctggtaaaatcgtttggcctt |
4195847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 34 - 255
Target Start/End: Original strand, 4233379 - 4233597
Alignment:
| Q |
34 |
tcctccatcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacacc |
133 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |
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|
| T |
4233379 |
tcctccatcatcaactcaaaaaaca---acaacccctcttacttactttgacatattttggctaaggttccatccagtagaacgtgttttcttctacgcc |
4233475 |
T |
|
| Q |
134 |
ctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttag |
233 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||| | || |||||||||||||||||||||||| |||||||||||||| | ||||||| ||||||| |
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| T |
4233476 |
ctcccaaattcacattcacacccttctttcttcttcaagaagcttgttccaattctcaaatcttcactctctttaaccctcaaggactttctccctttag |
4233575 |
T |
|
| Q |
234 |
ctggtaaactcgtttggccttt |
255 |
Q |
| |
|
||||||| ||||||||||||| |
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|
| T |
4233576 |
ctggtaacatcgtttggccttt |
4233597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 4250407 - 4250624
Alignment:
| Q |
34 |
tcctccatcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacacc |
133 |
Q |
| |
|
||||||||||||||| |||||| || ||| ||||||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||| |
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|
| T |
4250407 |
tcctccatcatcaac---aaaaaccacctcaatccctcttactttcttcgacatattttggctaaggttccatccagtagaacgagttttcttctacacc |
4250503 |
T |
|
| Q |
134 |
ctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttag |
233 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| || |||| ||||||||| ||||||||| ||| ||||||||||||||||||| ||||| ||||||| |
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|
| T |
4250504 |
ctcccaaattcacaatcacacccttctttcttctttcaaacgattgttccaaatctcaaatcatcactctctttaaccctccaacattttctccctttag |
4250603 |
T |
|
| Q |
234 |
ctggtaaactcgtttggcctt |
254 |
Q |
| |
|
||||||| |||||||||||| |
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|
| T |
4250604 |
ctggtaacatcgtttggcctt |
4250624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 4188741 - 4188956
Alignment:
| Q |
34 |
tcctccatcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacacc |
133 |
Q |
| |
|
|||| ||||||||||||||| | ||||||| ||| | |||| ||| |||||||||||| | | ||||||||| ||||||| | ||||| |||||| |
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|
| T |
4188741 |
tccttcatcatcaacccaaa---ctacaacaattcctttcactttcttcgacatattttggataaagttccatcctatagaacgaatcttcttttacacc |
4188837 |
T |
|
| Q |
134 |
ctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttag |
233 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| || |||||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
4188838 |
ctcccaaattcacaatcacacccttctttcttctttcaaaaactagttccaattctcagatcatcactctctttaaccctccaacactttctccctttag |
4188937 |
T |
|
| Q |
234 |
ctggtaaactcgtttggcc |
252 |
Q |
| |
|
|||||||| | |||||||| |
|
|
| T |
4188938 |
ctggtaaaattgtttggcc |
4188956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 4191898 - 4192084
Alignment:
| Q |
54 |
aaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcaca |
153 |
Q |
| |
|
|||| |||||| |||||| |||| ||| |||||||| ||||| | | | |||| || |||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
4191898 |
aaacgacaacattccctctcactttcttcgacatattatggctaaaggtatatccagtggaacgtgttttcttctacaccctcccaagttcacaatcaca |
4191997 |
T |
|
| Q |
154 |
cacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaa |
240 |
Q |
| |
|
| |||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
4191998 |
cccttctttcttcttccaaaagcttgttacaattctcaaatcttcaccctctttaaccctcaaacactttctccctttagctggtaa |
4192084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 254
Target Start/End: Original strand, 4094835 - 4094999
Alignment:
| Q |
90 |
tttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattct |
189 |
Q |
| |
|
||||||| || || ||||||||||||||| ||||||||||||||||||||| |||||| |||||| || |||| || ||| |||| |||||||||| || |
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|
| T |
4094835 |
tttggctaagatttcatccggtagaacgtattttcttctacaccctcccaagttcacactcacaccctacttttttcttcgaaaatcttgttccaaaact |
4094934 |
T |
|
| Q |
190 |
caaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt |
254 |
Q |
| |
|
|||||||||| |||||||||| || |||||||| || |||||||||||||| |||||||||||| |
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|
| T |
4094935 |
caaatcttcactctctttaactctacaacacttcctccctttagctggtaacatcgtttggcctt |
4094999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 90 - 254
Target Start/End: Original strand, 4121860 - 4122024
Alignment:
| Q |
90 |
tttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattct |
189 |
Q |
| |
|
||||||| ||||| ||||| || |||||| | |||||||||||||||||||||||||| |||||| ||||||||||| | |||| |||||||||| || |
|
|
| T |
4121860 |
tttggctaaggtttcatccagttgaacgtatcttcttctacaccctcccaaattcacaatcacacccttctttctttgttgaaaaccttgttccaaaact |
4121959 |
T |
|
| Q |
190 |
caaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt |
254 |
Q |
| |
|
|||||||||| ||||||||||||||||| | || | |||||||||||||| |||||||||||| |
|
|
| T |
4121960 |
caaatcttcactctctttaaccctccaaaaattcccacctttagctggtaacatcgtttggcctt |
4122024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 4241151 - 4241380
Alignment:
| Q |
18 |
aacacattaaagttactcctccatcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacg |
117 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||| |||| ||| | |||| |||| || |||||||||||||| ||||||||||| ||||| |
|
|
| T |
4241151 |
aacacatcaaagttgttcctccatcatcaaaccaaa---caacctcaatctctctcacttttttcgacatattttggctaaggttccatccaatagaata |
4241247 |
T |
|
| Q |
118 |
tgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaa |
217 |
Q |
| |
|
| || ||||||||||||||||||||||| ||| ||||||| ||||| || |||| | ||||||||| ||| ||||||||| | ||||| ||||||||| |
|
|
| T |
4241248 |
catcttattctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaa |
4241347 |
T |
|
| Q |
218 |
cactttcttcctttagctggtaaactcgtttgg |
250 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |
|
|
| T |
4241348 |
cactttcttcctttagccggtaacatcgtttgg |
4241380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 124 - 255
Target Start/End: Original strand, 4102417 - 4102548
Alignment:
| Q |
124 |
cttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacacttt |
223 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||| |||||| |||| |||||||||| ||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
4102417 |
cttctacaccctcccaaattcacaatcacacccttcttacttttttgaaaaccttgttccaaaactcaaatattcactctctttaaccctccaaaacttc |
4102516 |
T |
|
| Q |
224 |
cttcctttagctggtaaactcgtttggccttt |
255 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| |
|
|
| T |
4102517 |
ctccctttagctggtaacatcgtttggccttt |
4102548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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