View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2449_high_1 (Length: 809)
Name: NF2449_high_1
Description: NF2449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2449_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 119 - 545
Target Start/End: Original strand, 38944043 - 38944473
Alignment:
| Q |
119 |
acttcaaaataatgacttaaacaaataataagaggttctatgacataacttcccaaacattccttctcaaattgcataaattattctccatttttcattt |
218 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||| | ||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
38944043 |
acttcaaaacaatgacttaaacaaataataagaggttctatggcataataactcaaacctgccttctcgaattgcataaattattctccatttttcatat |
38944142 |
T |
|
| Q |
219 |
gtagctataaattcataagttgacaaaaccacaccaaattnnnnnnnnnnnntcaacttgaatggttttaggac-tgctccatctttcatatgtaaagtt |
317 |
Q |
| |
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|| ||||||||||||||||||||||||| ||||| ||| | |||||||||||| |||||||| ||||||| || |||||||||||||| |
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| T |
38944143 |
gtggctataaattcataagttgacaaaatcacactaaaataaaaactct---tcaacttgaatgcttttaggaaatgctccacctgtcatatgtaaagtt |
38944239 |
T |
|
| Q |
318 |
tgaggagcttaaaaatactaaccaaataaaaacaaaggattcagcaatgcaaaggacagtccattgtaaaaagatcagcacttacatgataatctagaga |
417 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
38944240 |
tgaggagcataaaaatactaaccaaataaaaacaaaggattcagcaatgcaaatgacagtccattgtaagaagatcagcacttacatgataatttagaga |
38944339 |
T |
|
| Q |
418 |
aatgaaaaacttgcaaaaattatttgtgtagattcaacattag--------tttcttatcctgagacaatttcacatacatgttatggacataaagtcaa |
509 |
Q |
| |
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||||||||| |||||||||| | ||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| |||||| |||| |
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| T |
38944340 |
aatgaaaaatttgcaaaaatca--tgtgtagattcaacattagtttcttactttcttatcctgagtcaatttcacaaacatgttatgagcataaaatcaa |
38944437 |
T |
|
| Q |
510 |
atacaaaaaatgatgatgacttgaacaaacccaatg |
545 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
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|
| T |
38944438 |
atacaaaaaatgataatgacttgaacaaacccaatg |
38944473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 598 - 694
Target Start/End: Original strand, 24240960 - 24241056
Alignment:
| Q |
598 |
accttctcatcaataagcaccatctccaaagagtttggctgctcagggttcagaaacgcaggaacctcccacatcctaaggaccctgaccttaaaac |
694 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||||| ||||||| | |||||||||||| |
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| T |
24240960 |
accttctcatcaatcaacaccatctccaaagagtttggctgatcaaggttcagaaatgcagggacctcccacattctaaggatcttgaccttaaaac |
24241056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 112 - 544
Target Start/End: Original strand, 5460629 - 5461060
Alignment:
| Q |
112 |
ctttttaacttcaaaataatgacttaaacaaataataagaggttctatgacataacttcc---caaacattccttctcaaattgcataaattattctcca |
208 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
5460629 |
ctttttattttcaaaaccatgacttatacaaataataagaggttctatggcataacaacaactcaaacatgccttctcaaattgcataaattcttctcca |
5460728 |
T |
|
| Q |
209 |
tttttcatttgtagctataaattcataagttgacaaaaccacaccaaattnnnnnnnnnnnntcaacttgaatggttttagga-ctgctccatctttcat |
307 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||||||| |||||||| | |||||||||||| |||||||| |||||||| || |||| |
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|
| T |
5460729 |
tttttcatatgtacctataaattcgtaagttgacaaaacaacaccaaaataaaaattct---tcaacttgaatgcttttaggaactgctccacctgtcat |
5460825 |
T |
|
| Q |
308 |
atgtaaagtttgaggagcttaaaaatactaaccaaataaaaacaaaggattcagcaatgcaaaggacagtccattgtaaaaagatcagcacttacatgat |
407 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||| |||||| | | ||||||||| |
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|
| T |
5460826 |
atgcaaagtttgagaagcttgaaaatactaaccaaagaaaaacaaagaattcagcaatgcaaatgacagtccattataagaagatcggtatttacatgat |
5460925 |
T |
|
| Q |
408 |
aatctagagaaatgaaaaacttgcaaaaattatttgtgtagattcaacattagtttcttatcctgagacaatttcacatacatgttatggacataaagtc |
507 |
Q |
| |
|
||| |||||| |||||||| ||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| || |
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| T |
5460926 |
aatatagagagatgaaaaatttgaaaaaatta--tgtgcagattcaacatcagtttcttatcctgagacaatttcacaaacatgttatgagcataaaatc |
5461023 |
T |
|
| Q |
508 |
aaatacaaaaaatgatgatgacttgaacaaacccaat |
544 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5461024 |
aaatacaaaaaatgataatgacttgaacaaacccaat |
5461060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 5460574 - 5460635
Alignment:
| Q |
27 |
taagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5460574 |
taagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta |
5460635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 112 - 544
Target Start/End: Complemental strand, 29379206 - 29378787
Alignment:
| Q |
112 |
ctttttaacttcaaaataatgacttaaacaaataataagaggttctatgacataacttcc---caaacattccttctcaaattgcataaattattctcca |
208 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
29379206 |
ctttttattttcaaaaccatgacttatacaaataataagaggttctatggcataacaacaactcaaacatgccttctcaaattgcataaattcttctcca |
29379107 |
T |
|
| Q |
209 |
tttttcatttgtagctataaattcataagttgacaaaaccacaccaaattnnnnnnnnnnnntcaacttgaatggttttagga-ctgctccatctttcat |
307 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||||||| |||||||| | |||||||||||| |||||||| |||||||| || |||| |
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|
| T |
29379106 |
tttttcatatgtacctataaattcgtaagttgacaaaacaacaccaaaataaaaatttt---tcaacttgaatgcttttaggaactgctccacctgtcat |
29379010 |
T |
|
| Q |
308 |
atgtaaagtttgaggagcttaaaaatactaaccaaataaaaacaaaggattcagcaatgcaaaggacagtccattgtaaaaagatcagcacttacatgat |
407 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||||||| ||||||| || |||| |||||||||| ||||||||||| ||| |||||| | ||||||||||| |
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|
| T |
29379009 |
atgcaaagtttgagaagcttgaaaatactaaccaaagaaaaacagagaattccgcaatgcaaatgacagtccattataagaagatcggtacttacatgat |
29378910 |
T |
|
| Q |
408 |
aatctagagaaatgaaaaacttgcaaaaattatttgtgtagattcaacattagtttcttatcctgagacaatttcacatacatgttatggacataaagtc |
507 |
Q |
| |
|
||| ||||| |||||||| ||| |||||||| |||| ||||||||||| |||||||||||||| ||| |||||||||| |||||| || |
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|
| T |
29378909 |
aatatagag--atgaaaaatttgaaaaaatta--tgtgcagattcaacatcagtttcttatcctg----------acaaacatgttatgagcataaaatc |
29378824 |
T |
|
| Q |
508 |
aaatacaaaaaatgatgatgacttgaacaaacccaat |
544 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |
|
|
| T |
29378823 |
aaatactaatcatgataatgacttgaacaaacccaat |
29378787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 29379256 - 29379200
Alignment:
| Q |
32 |
aaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29379256 |
aaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta |
29379200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 112 - 394
Target Start/End: Complemental strand, 43415098 - 43414817
Alignment:
| Q |
112 |
ctttttaacttcaaaataatgacttaaacaaataataagaggttctatgacataacttcccaaacattccttctcaaattgcataaattattctccattt |
211 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||| | ||||||||||||||||||||| |||| |||| |
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|
| T |
43415098 |
ctttttaacttcaaaatcatgacttaaacaaataataagaggttctatggcataacaactcaaacctgccttctcaaattgcataaattcatctcaattt |
43414999 |
T |
|
| Q |
212 |
ttcatttgtagctataaattcataagttgacaaaaccacaccaaattnnnnnnnnnnnntcaacttgaatggttttagg-actgctccatctttcatatg |
310 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |||||||| | |||||||||||| ||||||| ||||||||| || ||||||| |
|
|
| T |
43414998 |
ttcatatgtacctataaattcataagttgacaaaaatacaccaaaat---aaatattcttcaacttgaatgcttttaggaactgctccacctgtcatatg |
43414902 |
T |
|
| Q |
311 |
taaagtttgaggagcttaaaaatactaaccaaa-taaaaacaaaggattcagcaatgcaaaggacagtccattgtaaaaagatca |
394 |
Q |
| |
|
||||||| | ||| | ||||||||||||||| ||||| |||| ||||||||||||||| |||| ||||| |||| ||||||| |
|
|
| T |
43414901 |
caaagttttaaaagcctgaaaatactaaccaaagaaaaaaaaaagaattcagcaatgcaaatgacaatccatcgtaagaagatca |
43414817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 43415153 - 43415088
Alignment:
| Q |
27 |
taagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaactttttaactt |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43415153 |
taagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaactttttaactt |
43415088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 447 - 544
Target Start/End: Complemental strand, 43414796 - 43414699
Alignment:
| Q |
447 |
agattcaacattagtttcttatcctgagacaatttcacatacatgttatggacataaagtcaaatacaaaaaatgatgatgacttgaacaaacccaat |
544 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
43414796 |
agattaaacatcggtttcttatcctgagacaatttcacaaacatgttatgagcataaaatcaaatacaaaaaatgataatgacttgaataaacccaat |
43414699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 396 - 544
Target Start/End: Original strand, 30871969 - 30872114
Alignment:
| Q |
396 |
cacttacatgataatctagagaaatgaaaaacttgcaaaaattatttgtgtagattcaacattagtttcttatcctgagacaatttcacatacatgttat |
495 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||| || || ||||||||| ||||||||||||||| ||||||||||| ||||| || |
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|
| T |
30871969 |
cacttatatgataatctagagaaatgaaaaatttgcaaaaattttt---gtcaattcaacatcagtttcttatcctgatacaatttcacaaacatgccat |
30872065 |
T |
|
| Q |
496 |
ggacataaagtcaaatacaaaaaatgatgatgacttgaacaaacccaat |
544 |
Q |
| |
|
| |||||| |||||||||||||||||| |||| |||| || ||||||| |
|
|
| T |
30872066 |
gagcataaaatcaaatacaaaaaatgataatgaattgatcacacccaat |
30872114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 591 - 694
Target Start/End: Original strand, 18354340 - 18354443
Alignment:
| Q |
591 |
taaacacaccttctcatcaataagcaccatctccaaagagtttggctgctcagggttcagaaacgcaggaacctcccacatcctaaggaccctgacctta |
690 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||| |||||| |||| |||| || ||| |||||| |
|
|
| T |
18354340 |
taaacataccttctcatcaataagcaccatctccaaagagtttggctgatcagggttcaggaaagaaggtacctccgacattctaaagatcctaacctta |
18354439 |
T |
|
| Q |
691 |
aaac |
694 |
Q |
| |
|
|||| |
|
|
| T |
18354440 |
aaac |
18354443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 598 - 693
Target Start/End: Original strand, 13792436 - 13792531
Alignment:
| Q |
598 |
accttctcatcaataagcaccatctccaaagagtttggctgctcagggttcagaaacgcaggaacctcccacatcctaaggaccctgaccttaaaa |
693 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| || |||||||||| ||| ||||| ||||||||||| ||||| | ||||||||||||| |
|
|
| T |
13792436 |
accttctcatcaatcaacaccatctccaaagagtttggttgatcagggttcataaatgcagggacctcccacattctaagaatcctgaccttaaaa |
13792531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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