View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2449_high_10 (Length: 242)
Name: NF2449_high_10
Description: NF2449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2449_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 49823914 - 49824139
Alignment:
| Q |
1 |
tatacttgatgtctaaattgcggttttggttccaaatnnnnnnnnnn--cttagaatttgattagtgtggctaattcattacgattccagaaaaattaaa |
98 |
Q |
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| T |
49823914 |
tatacttgatgtctaaattgcggttttggttccaaataaaaaaaaaaaacttagaatttgattagtgtggctaattcattacgattccagaaaaattaaa |
49824013 |
T |
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| Q |
99 |
gtacatcatcgaaaataaaaggaggagcttcaatccacgatacacaaaaagcacaagttgacactacttcttaaactatgtctgaatcaacaatactcaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49824014 |
gtacatcatcgaaaataaaaggaggagcttcaatccacgatacacaaaaagcacaagttgacacta---cttaaactatgtctgaatcaacaatactcaa |
49824110 |
T |
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| Q |
199 |
ttagatgcaaggcagacaaacaaaggcat |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
49824111 |
ttagatgcaaggcagacaaacaaaggcat |
49824139 |
T |
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