View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2449_low_1 (Length: 809)

Name: NF2449_low_1
Description: NF2449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2449_low_1
NF2449_low_1
[»] chr8 (2 HSPs)
chr8 (119-545)||(38944043-38944473)
chr8 (598-694)||(24240960-24241056)
[»] chr4 (2 HSPs)
chr4 (112-544)||(5460629-5461060)
chr4 (27-88)||(5460574-5460635)
[»] chr1 (2 HSPs)
chr1 (112-544)||(29378787-29379206)
chr1 (32-88)||(29379200-29379256)
[»] chr7 (3 HSPs)
chr7 (112-394)||(43414817-43415098)
chr7 (27-92)||(43415088-43415153)
chr7 (447-544)||(43414699-43414796)
[»] chr3 (3 HSPs)
chr3 (396-544)||(30871969-30872114)
chr3 (591-694)||(18354340-18354443)
chr3 (598-693)||(13792436-13792531)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 119 - 545
Target Start/End: Original strand, 38944043 - 38944473
Alignment:
Q  119 acttcaaaataatgacttaaacaaataataagaggttctatgacataacttcccaaacattccttctcaaattgcataaattattctccatttttcattt 218  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||   | ||||| | ||||||| ||||||||||||||||||||||||||||| |    
T  38944043 acttcaaaacaatgacttaaacaaataataagaggttctatggcataataactcaaacctgccttctcgaattgcataaattattctccatttttcatat 38944142  T
Q  219 gtagctataaattcataagttgacaaaaccacaccaaattnnnnnnnnnnnntcaacttgaatggttttaggac-tgctccatctttcatatgtaaagtt 317  Q
    || ||||||||||||||||||||||||| ||||| ||| |            |||||||||||| ||||||||  ||||||| || ||||||||||||||    
T  38944143 gtggctataaattcataagttgacaaaatcacactaaaataaaaactct---tcaacttgaatgcttttaggaaatgctccacctgtcatatgtaaagtt 38944239  T
Q  318 tgaggagcttaaaaatactaaccaaataaaaacaaaggattcagcaatgcaaaggacagtccattgtaaaaagatcagcacttacatgataatctagaga 417  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  38944240 tgaggagcataaaaatactaaccaaataaaaacaaaggattcagcaatgcaaatgacagtccattgtaagaagatcagcacttacatgataatttagaga 38944339  T
Q  418 aatgaaaaacttgcaaaaattatttgtgtagattcaacattag--------tttcttatcctgagacaatttcacatacatgttatggacataaagtcaa 509  Q
    ||||||||| |||||||||| |  |||||||||||||||||||        |||||||||||||| |||||||||| ||||||||||  |||||| ||||    
T  38944340 aatgaaaaatttgcaaaaatca--tgtgtagattcaacattagtttcttactttcttatcctgagtcaatttcacaaacatgttatgagcataaaatcaa 38944437  T
Q  510 atacaaaaaatgatgatgacttgaacaaacccaatg 545  Q
    |||||||||||||| |||||||||||||||||||||    
T  38944438 atacaaaaaatgataatgacttgaacaaacccaatg 38944473  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 598 - 694
Target Start/End: Original strand, 24240960 - 24241056
Alignment:
Q  598 accttctcatcaataagcaccatctccaaagagtttggctgctcagggttcagaaacgcaggaacctcccacatcctaaggaccctgaccttaaaac 694  Q
    |||||||||||||| | |||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||||| ||||||| | ||||||||||||    
T  24240960 accttctcatcaatcaacaccatctccaaagagtttggctgatcaaggttcagaaatgcagggacctcccacattctaaggatcttgaccttaaaac 24241056  T

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Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 112 - 544
Target Start/End: Original strand, 5460629 - 5461060
Alignment:
Q  112 ctttttaacttcaaaataatgacttaaacaaataataagaggttctatgacataacttcc---caaacattccttctcaaattgcataaattattctcca 208  Q
    |||||||  |||||||  |||||||| |||||||||||||||||||||| ||||||  |    ||||||| ||||||||||||||||||||| |||||||    
T  5460629 ctttttattttcaaaaccatgacttatacaaataataagaggttctatggcataacaacaactcaaacatgccttctcaaattgcataaattcttctcca 5460728  T
Q  209 tttttcatttgtagctataaattcataagttgacaaaaccacaccaaattnnnnnnnnnnnntcaacttgaatggttttagga-ctgctccatctttcat 307  Q
    |||||||| |||| |||||||||| |||||||||||||| |||||||| |            |||||||||||| |||||||| |||||||| || ||||    
T  5460729 tttttcatatgtacctataaattcgtaagttgacaaaacaacaccaaaataaaaattct---tcaacttgaatgcttttaggaactgctccacctgtcat 5460825  T
Q  308 atgtaaagtttgaggagcttaaaaatactaaccaaataaaaacaaaggattcagcaatgcaaaggacagtccattgtaaaaagatcagcacttacatgat 407  Q
    ||| |||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||| |||||| | | |||||||||    
T  5460826 atgcaaagtttgagaagcttgaaaatactaaccaaagaaaaacaaagaattcagcaatgcaaatgacagtccattataagaagatcggtatttacatgat 5460925  T
Q  408 aatctagagaaatgaaaaacttgcaaaaattatttgtgtagattcaacattagtttcttatcctgagacaatttcacatacatgttatggacataaagtc 507  Q
    ||| |||||| |||||||| ||| ||||||||  |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||| ||    
T  5460926 aatatagagagatgaaaaatttgaaaaaatta--tgtgcagattcaacatcagtttcttatcctgagacaatttcacaaacatgttatgagcataaaatc 5461023  T
Q  508 aaatacaaaaaatgatgatgacttgaacaaacccaat 544  Q
    |||||||||||||||| ||||||||||||||||||||    
T  5461024 aaatacaaaaaatgataatgacttgaacaaacccaat 5461060  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 5460574 - 5460635
Alignment:
Q  27 taagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5460574 taagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta 5460635  T

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Target: chr1 (Bit Score: 141; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 112 - 544
Target Start/End: Complemental strand, 29379206 - 29378787
Alignment:
Q  112 ctttttaacttcaaaataatgacttaaacaaataataagaggttctatgacataacttcc---caaacattccttctcaaattgcataaattattctcca 208  Q
    |||||||  |||||||  |||||||| |||||||||||||||||||||| ||||||  |    ||||||| ||||||||||||||||||||| |||||||    
T  29379206 ctttttattttcaaaaccatgacttatacaaataataagaggttctatggcataacaacaactcaaacatgccttctcaaattgcataaattcttctcca 29379107  T
Q  209 tttttcatttgtagctataaattcataagttgacaaaaccacaccaaattnnnnnnnnnnnntcaacttgaatggttttagga-ctgctccatctttcat 307  Q
    |||||||| |||| |||||||||| |||||||||||||| |||||||| |            |||||||||||| |||||||| |||||||| || ||||    
T  29379106 tttttcatatgtacctataaattcgtaagttgacaaaacaacaccaaaataaaaatttt---tcaacttgaatgcttttaggaactgctccacctgtcat 29379010  T
Q  308 atgtaaagtttgaggagcttaaaaatactaaccaaataaaaacaaaggattcagcaatgcaaaggacagtccattgtaaaaagatcagcacttacatgat 407  Q
    ||| |||||||||| ||||| ||||||||||||||| ||||||| || |||| |||||||||| ||||||||||| ||| |||||| | |||||||||||    
T  29379009 atgcaaagtttgagaagcttgaaaatactaaccaaagaaaaacagagaattccgcaatgcaaatgacagtccattataagaagatcggtacttacatgat 29378910  T
Q  408 aatctagagaaatgaaaaacttgcaaaaattatttgtgtagattcaacattagtttcttatcctgagacaatttcacatacatgttatggacataaagtc 507  Q
    ||| |||||  |||||||| ||| ||||||||  |||| ||||||||||| ||||||||||||||          ||| ||||||||||  |||||| ||    
T  29378909 aatatagag--atgaaaaatttgaaaaaatta--tgtgcagattcaacatcagtttcttatcctg----------acaaacatgttatgagcataaaatc 29378824  T
Q  508 aaatacaaaaaatgatgatgacttgaacaaacccaat 544  Q
    |||||| ||  ||||| ||||||||||||||||||||    
T  29378823 aaatactaatcatgataatgacttgaacaaacccaat 29378787  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 29379256 - 29379200
Alignment:
Q  32 aaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29379256 aaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta 29379200  T

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Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 112 - 394
Target Start/End: Complemental strand, 43415098 - 43414817
Alignment:
Q  112 ctttttaacttcaaaataatgacttaaacaaataataagaggttctatgacataacttcccaaacattccttctcaaattgcataaattattctccattt 211  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||  | ||||| | |||||||||||||||||||||  |||| ||||    
T  43415098 ctttttaacttcaaaatcatgacttaaacaaataataagaggttctatggcataacaactcaaacctgccttctcaaattgcataaattcatctcaattt 43414999  T
Q  212 ttcatttgtagctataaattcataagttgacaaaaccacaccaaattnnnnnnnnnnnntcaacttgaatggttttagg-actgctccatctttcatatg 310  Q
    ||||| |||| ||||||||||||||||||||||||  |||||||| |            |||||||||||| ||||||| ||||||||| || |||||||    
T  43414998 ttcatatgtacctataaattcataagttgacaaaaatacaccaaaat---aaatattcttcaacttgaatgcttttaggaactgctccacctgtcatatg 43414902  T
Q  311 taaagtttgaggagcttaaaaatactaaccaaa-taaaaacaaaggattcagcaatgcaaaggacagtccattgtaaaaagatca 394  Q
     ||||||| |  ||| | |||||||||||||||  ||||| |||| ||||||||||||||| |||| ||||| |||| |||||||    
T  43414901 caaagttttaaaagcctgaaaatactaaccaaagaaaaaaaaaagaattcagcaatgcaaatgacaatccatcgtaagaagatca 43414817  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 43415153 - 43415088
Alignment:
Q  27 taagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaactttttaactt 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43415153 taagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaactttttaactt 43415088  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 447 - 544
Target Start/End: Complemental strand, 43414796 - 43414699
Alignment:
Q  447 agattcaacattagtttcttatcctgagacaatttcacatacatgttatggacataaagtcaaatacaaaaaatgatgatgacttgaacaaacccaat 544  Q
    ||||| |||||  |||||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||| |||||||||| |||||||||    
T  43414796 agattaaacatcggtttcttatcctgagacaatttcacaaacatgttatgagcataaaatcaaatacaaaaaatgataatgacttgaataaacccaat 43414699  T

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Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 396 - 544
Target Start/End: Original strand, 30871969 - 30872114
Alignment:
Q  396 cacttacatgataatctagagaaatgaaaaacttgcaaaaattatttgtgtagattcaacattagtttcttatcctgagacaatttcacatacatgttat 495  Q
    |||||| |||||||||||||||||||||||| ||||||||||| ||   ||  ||||||||| ||||||||||||||| ||||||||||| |||||  ||    
T  30871969 cacttatatgataatctagagaaatgaaaaatttgcaaaaattttt---gtcaattcaacatcagtttcttatcctgatacaatttcacaaacatgccat 30872065  T
Q  496 ggacataaagtcaaatacaaaaaatgatgatgacttgaacaaacccaat 544  Q
    |  |||||| |||||||||||||||||| |||| |||| || |||||||    
T  30872066 gagcataaaatcaaatacaaaaaatgataatgaattgatcacacccaat 30872114  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 591 - 694
Target Start/End: Original strand, 18354340 - 18354443
Alignment:
Q  591 taaacacaccttctcatcaataagcaccatctccaaagagtttggctgctcagggttcagaaacgcaggaacctcccacatcctaaggaccctgacctta 690  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||| |||||| |||| |||| || ||| ||||||    
T  18354340 taaacataccttctcatcaataagcaccatctccaaagagtttggctgatcagggttcaggaaagaaggtacctccgacattctaaagatcctaacctta 18354439  T
Q  691 aaac 694  Q
    ||||    
T  18354440 aaac 18354443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 598 - 693
Target Start/End: Original strand, 13792436 - 13792531
Alignment:
Q  598 accttctcatcaataagcaccatctccaaagagtttggctgctcagggttcagaaacgcaggaacctcccacatcctaaggaccctgaccttaaaa 693  Q
    |||||||||||||| | ||||||||||||||||||||| || |||||||||| ||| ||||| ||||||||||| ||||| | |||||||||||||    
T  13792436 accttctcatcaatcaacaccatctccaaagagtttggttgatcagggttcataaatgcagggacctcccacattctaagaatcctgaccttaaaa 13792531  T

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