View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2449_low_11 (Length: 239)
Name: NF2449_low_11
Description: NF2449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2449_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 40771140 - 40771325
Alignment:
| Q |
35 |
ttaaaatctttaatcattcttcataatcaaaattcaataatcacctctccaagaacaagtgagtccaaaaaggccataggaagctcctcttgacactcat |
134 |
Q |
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| T |
40771140 |
ttaaaatctttaatcattcttcataatcaaaattcaataatcacctctccaagaacaagtgagtccaaaaaggccataggaagctcctcttgacactcat |
40771239 |
T |
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| Q |
135 |
ggatagccaaatccttttcagttactttgtcaatctttttaaaagcatacaaaggtagctttgcatctattaacaaaacaataacc |
220 |
Q |
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| T |
40771240 |
ggatagccaaatccttttcggttactttgtcaatctttttaaaagcatacaaaggtagctttgcatctattaacaaaacaataacc |
40771325 |
T |
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