View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2449_low_4 (Length: 317)
Name: NF2449_low_4
Description: NF2449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2449_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 6426368 - 6426648
Alignment:
| Q |
18 |
attacataaattaaggaaggaagccatgggaggctcagaggcttaaagcacttacttaatggattatttctttggggtatacaaatgttttctttgagat |
117 |
Q |
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| T |
6426368 |
attacataaattaaggaaggaaaccatgtgaggctcagaggcttaaagcacttacttaatggattatttctttggggtatacaaatgttttctttgagat |
6426467 |
T |
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| Q |
118 |
ggattgtatacaagtgatagatctttgcttagtttgtacaagtacaactactttaaattattgacagtattttgattatcctaatgtattttttctatga |
217 |
Q |
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| T |
6426468 |
ggattgtatacaactgatagatctttgcttagtttgtac------aactactttaaattattgacagtgttttgattatcctaatgtattttttctatga |
6426561 |
T |
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| Q |
218 |
atttcaatcataaaaagacattaacatacaacaaatattaatcttgatggtttctaaggtgagtgaatcgtcaagtccctcaagttc |
304 |
Q |
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| T |
6426562 |
atttcaatcataaaaagacattaacctacaacaaatattaaccttgatggtttctaaggtaagtgaatcgtcaagtccctcaagttc |
6426648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 6426263 - 6426324
Alignment:
| Q |
75 |
aatggattatttctttggggtatacaaatgttttctttgagatggattgtatacaagtgata |
136 |
Q |
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| T |
6426263 |
aatggattattcctttggagtatactaatgtgttctttgagatcgattataaactagtgata |
6426324 |
T |
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