View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2449_low_8 (Length: 264)
Name: NF2449_low_8
Description: NF2449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2449_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 40512978 - 40512745
Alignment:
| Q |
10 |
aaatgaatgtgccaaagacatagtaaaaagtgcgtgcaggggagatatgtatgtgacaaacccttcatggctcaaagcggtgtttccttctaaggtgctt |
109 |
Q |
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| T |
40512978 |
aaatgaatgtgccaaagacatagtaaaaagtgcgtgcaggggagatatgtatgtgacaaacccttcatggctcaaagcggtgtttccttctaagctgctt |
40512879 |
T |
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| Q |
110 |
tttcctgagttagtggactgggcagaacgacacatctttggcctttggcaaaagccttcttgtaagaacagcgatcttcgtatgtctaagaataaccaag |
209 |
Q |
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| T |
40512878 |
tttcctgagttagtggactgggcagaacgacacatctttggcctttggcaaaagccttcctgtaagaacggcgatcttcgtatgtctaagaataaccaag |
40512779 |
T |
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| Q |
210 |
cgtttaagacagaataataagacaaaattactct |
243 |
Q |
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| T |
40512778 |
cgcttaagacagaataataagacaaaattactct |
40512745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 40526947 - 40526871
Alignment:
| Q |
13 |
tgaatgtgccaaagacatagtaaaaagtgcgtgcaggggagatatgtatgtgaca----aacccttcatggctcaaa |
85 |
Q |
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||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
40526947 |
tgaatgtgccaaagacatagtgaaaggtgcatgcaggggagatatttatgtgacaaaccaacccttcatggctcaaa |
40526871 |
T |
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