View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2450_high_4 (Length: 334)
Name: NF2450_high_4
Description: NF2450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2450_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 3238197 - 3238025
Alignment:
| Q |
17 |
atattatgattattattctatgtttgatacacatctaataacaaacagatagcgtgtgtatatcacattcaaatgacaacatacctgtttcgaaagaatt |
116 |
Q |
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| T |
3238197 |
atattatgattattattctatgtttgatacacatctaataacaaacagatagcgtgtgtatatcacattcaaatgacaacatacctgtttcgaaagaatt |
3238098 |
T |
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| Q |
117 |
atagacactattttcaaaaagaacctccaatattgttttaaaaagaaaagtttagaaatttatgacaaacact |
189 |
Q |
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| T |
3238097 |
atagacactattttcaaaaagaacctccaatattgttttaaaaagaaaagtttagaaatttatgacaaacact |
3238025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 3237959 - 3237892
Alignment:
| Q |
254 |
ctatataatcatgctatacaaatcctgaattactaagaaaaaatggaagtacaataatcacacaggtt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3237959 |
ctatataatcatgctatacaaatcctgaattactaagaaaaaatggaagtacaataatcacactggtt |
3237892 |
T |
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