View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2450_low_1 (Length: 552)

Name: NF2450_low_1
Description: NF2450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2450_low_1
NF2450_low_1
[»] chr5 (1 HSPs)
chr5 (72-540)||(43388839-43389312)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 72 - 540
Target Start/End: Original strand, 43388839 - 43389312
Alignment:
Q  72 aagctgagcaaagtgaaggatacgcagctcatgaatagagtcgtttcgaattatttgtttttacaaagggnnnnnnnnnnnnnnnnnnnnnttagtatct 171  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||                     |||||||||    
T  43388839 aagctgagcaaagtgaaggatacgcagctcatgaatagagtcatttcgacttatttgtttttacaaaggggaaagaaaagaaaaga-----ttagtatct 43388933  T
Q  172 gatttgataaatcaaatccagttcattgttgtttagtctacctgcccaattcacgtcccttaaaatattaccannnnnnnaatttgaat----------c 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||          |    
T  43388934 gatttgataaatcaaatccagttcattgttgtttagtctacctgcccaattcacgtcccttaaaatattaccatttttttaatttgaatgaaaaagaatc 43389033  T
Q  262 nnnnnnngaaatcaagttttcttctttgctaataaaatacaaactagagaatctcgactgcagatgtaatatggattcacaaatatccaacgcccggacc 361  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43389034 aaaaaaagaaatcaagttttcttctttgctaataaaatacaaactagagaatctcgactgcagatgtaatatggattcacaaatatccaacgcccggacc 43389133  T
Q  362 ccatttaatattttatacattatgggaaaactaaaaagctaattcatattaaaatgttattcatagttttttaggacttaagtctagtttcatcaaggtt 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43389134 ccatttaatattttatacattatgggaaaactaaaaagctaattcatattaaaatgttattcatagttttttaggacttaagtctagtttcatcaaggtt 43389233  T
Q  462 gaatcctacaacattcattcattctttttacctttttctctatggctctcttgatttattttgttttctctcacatatt 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43389234 gaatcctacaacattcattcattctttttacctttttctctatggctctcttgatttattttgttttctctcacatatt 43389312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University