View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2450_low_10 (Length: 214)
Name: NF2450_low_10
Description: NF2450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2450_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 5391702 - 5391525
Alignment:
| Q |
15 |
atcaagaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcga |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5391702 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcaa |
5391603 |
T |
|
| Q |
115 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttca |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5391602 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtgtcccttca |
5391525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 5395507 - 5395336
Alignment:
| Q |
21 |
aagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcgaagttaa |
120 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5395507 |
aagacgtcgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaagttaa |
5395408 |
T |
|
| Q |
121 |
cggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttca |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
5395407 |
cggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctcaatctttgccatgtgtcccttca |
5395336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 5401649 - 5401478
Alignment:
| Q |
26 |
gttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcgaagttaacggtt |
125 |
Q |
| |
|
|||||||||||||| || || ||||| || ||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| || || || || ||| |
|
|
| T |
5401649 |
gttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtgaggtgaatggtg |
5401550 |
T |
|
| Q |
126 |
caatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagactg |
197 |
Q |
| |
|
| ||||| ||||||||||||| |||||| ||||||||| ||| ||||||| ||||| || |||||||||| |
|
|
| T |
5401549 |
ccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactg |
5401478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University