View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2450_low_2 (Length: 467)
Name: NF2450_low_2
Description: NF2450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2450_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 72 - 452
Target Start/End: Original strand, 43388839 - 43389224
Alignment:
| Q |
72 |
aagctgagcaaagtgaaggatacgcagctcatgaatagagtcgtttcgaattatttgtttttacaaagggnnnnnnnnnnnnnnnnnnnnnttagtatct |
171 |
Q |
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| T |
43388839 |
aagctgagcaaagtgaaggatacgcagctcatgaatagagtcatttcgacttatttgtttttacaaaggggaaagaaaagaaaaga-----ttagtatct |
43388933 |
T |
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| Q |
172 |
gatttgataaatcaaatccagttcattgttgtttagtctacctgcccaattcacgtcccttaaaatattaccannnnnnnaatttgaat----------c |
261 |
Q |
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| T |
43388934 |
gatttgataaatcaaatccagttcattgttgtttagtctacctgcccaattcacgtcccttaaaatattaccatttttttaatttgaatgaaaaagaatc |
43389033 |
T |
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| Q |
262 |
nnnnnnngaaatcaagttttcttctttgctaataaaatacaaactagagaatctcgactgcagatgtaatatggattcacaaatatccaacgcccggacc |
361 |
Q |
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| T |
43389034 |
aaaaaaagaaatcaagttttcttctttgctaataaaatacaaactagagaatctcgactgcagatgtaatatggattcacaaatatccaacgcccggacc |
43389133 |
T |
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| Q |
362 |
ccatttaatattttatacattatgggaaaactaaaaagctaattcatattaaaatgttattcatagttttttaggacttaagtctagtttc |
452 |
Q |
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| T |
43389134 |
ccatttaatattttatacattatgggaaaactaaaaagctaattcatattaaaatgttattcatagttttttaggacttaagtctagtttc |
43389224 |
T |
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