View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2450_low_5 (Length: 340)
Name: NF2450_low_5
Description: NF2450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2450_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 2 - 323
Target Start/End: Complemental strand, 29145174 - 29144853
Alignment:
| Q |
2 |
aagaaaactaacctggcttgaggaactcgatttcgatgcagggttggcttcattttgaccaacaacttgatcctttttatcatcaaccttagttaatacc |
101 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145174 |
aagaaaactaacctggcttgaggagcccgatttcgatgcagggttggcttcattttgaccaacaacttgatcctttttatcatcaaccttagttaatacc |
29145075 |
T |
|
| Q |
102 |
aagctagaatcataatctgaagagccatctaaaaaagttgtgtcgctgagcaaagatctagttgaaccatgtggagtaattgagtcagaatttggcttaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145074 |
aagctagaatcataatctgaagagccatctaaaaaagttgtgtcgctgagcaaagatctagttgaaccatgtggagtaattgagtcagaatttggcttaa |
29144975 |
T |
|
| Q |
202 |
ccaatctccttttcagaatggaatcaattgtcttagaagagtaactgttagtgacattttcctctgtgcttttcttcttttgctcataaactttagctcc |
301 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144974 |
ccaatctccttttcagaatggaatcaatcgtcttagaagagtaactgttagtgacattttcctctgtgcttttcttcttttgctcataaactttagctcc |
29144875 |
T |
|
| Q |
302 |
atttttcatgttctgtccaatt |
323 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
29144874 |
atttttcatgttctgtccaatt |
29144853 |
T |
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