View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2451_low_10 (Length: 236)
Name: NF2451_low_10
Description: NF2451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2451_low_10 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 32898552 - 32898768
Alignment:
| Q |
20 |
tagcctcaaactcagccagtaacaacagcatgagtctttgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctcccta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898552 |
tagcctcaaactcagccagtaacaacagcatgagtctttgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctcccta |
32898651 |
T |
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| Q |
120 |
cactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaacaacactgatctaaaggagcacgtgtcctgtttctcc |
219 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898652 |
caccgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaacaacactgatctaaaggagcacgtgtcctgtttctcc |
32898751 |
T |
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| Q |
220 |
acaacatctacaacatc |
236 |
Q |
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||||||||||||||||| |
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| T |
32898752 |
acaacatctacaacatc |
32898768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 46312417 - 46312621
Alignment:
| Q |
20 |
tagcctcaaactcagccagtaacaacagcatgagtctttgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctcccta |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
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| T |
46312417 |
tagcctcaaactcagccaacaacaacagcatgagtctttgtccagaaccaagttcaccttcttccgtttatcttccacctcttcttgattcatctcctta |
46312516 |
T |
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| Q |
120 |
cactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaacaacactgatctaaaggagcacgtgtcctgtttctcc |
219 |
Q |
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| T |
46312517 |
caccgccgctagcatcgccacattcaacggcgaccaaatgtgtaact------------ccaacaacactgatctaaaggagcacgtgtcctgtttctcc |
46312604 |
T |
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| Q |
220 |
acaacatctacaacatc |
236 |
Q |
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||||||||||||||||| |
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| T |
46312605 |
acaacatctacaacatc |
46312621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 20409924 - 20409720
Alignment:
| Q |
20 |
tagcctcaaactcagccagtaacaacagcatgagtctttgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctcccta |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
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| T |
20409924 |
tagcctcaaactcagccaacaacaacagcatgagtctctgtccagaaccaagttcaccttcttccgtttatcttccacctcttcttgattcatctcctta |
20409825 |
T |
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| Q |
120 |
cactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaacaacactgatctaaaggagcacgtgtcctgtttctcc |
219 |
Q |
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||| |||||||||| |||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20409824 |
caccgccgctagcatcgccacattcaacggcgaccaaatgtgtaact------------ccaacaacactgatctaaaggagcacgtgtcctgtttctcc |
20409737 |
T |
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| Q |
220 |
acaacatctacaacatc |
236 |
Q |
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||||||||||||||||| |
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| T |
20409736 |
acaacatctacaacatc |
20409720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 17414893 - 17415097
Alignment:
| Q |
20 |
tagcctcaaactcagccagtaacaacagcatgagtctttgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctcccta |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
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| T |
17414893 |
tagcctcaaactcagccaacaacaacagcatgagtctctgtccagaaccaagttcaccttcttccgtttatcttccacctcttcttgattcatctcctta |
17414992 |
T |
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| Q |
120 |
cactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaacaacactgatctaaaggagcacgtgtcctgtttctcc |
219 |
Q |
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||| |||||||||| |||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17414993 |
caccgccgctagcatcgccacattcaacggcgaccaaatgtgtaact------------ccaacaacactgatctaaaggagcacgtgtcctgtttctcc |
17415080 |
T |
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| Q |
220 |
acaacatctacaacatc |
236 |
Q |
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||||||||||||||||| |
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| T |
17415081 |
acaacatctacaacatc |
17415097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 40168989 - 40169184
Alignment:
| Q |
20 |
tagcctcaaactcagccagtaacaacagcatgagtctttgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctcccta |
119 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
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| T |
40168989 |
tagcctcaaactcagccaacaacaacaacatgagtctctgtccagaaccaagttcaccttcttccgtttatcttccacctcttcttgattcatctcctta |
40169088 |
T |
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| Q |
120 |
cactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaacaacactgatctaaaggagcacgtgtcctgtttctcc |
219 |
Q |
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||| || ||||||| |||| |||||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
40169089 |
caccgctgctagcatcgccacattcaacggcgaccaaatgtgtaact------------ccaacaacaccgatctaaaggagcacgtgtcctgtttctcc |
40169176 |
T |
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