View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2451_low_3 (Length: 456)
Name: NF2451_low_3
Description: NF2451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2451_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 59 - 412
Target Start/End: Complemental strand, 40426664 - 40426315
Alignment:
| Q |
59 |
gatagaatatgcgagcaaaccatgggaaaattgctgatttggcaaaaataagagtagtaataaatcagcttatgtgtcaacaccataagtcgcacttcac |
158 |
Q |
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| T |
40426664 |
gatagaatatgcgagcaa----tgggaaaattgctgatttggcaaaaataagagtagtaataaatcagcttatgtgtcaacaccataagtcgcacttcac |
40426569 |
T |
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| Q |
159 |
attcaaaaattcaaaaatataaataagcaaagatatatggtcatttatgcattattacaaccattataatcgtatnnnnnnnctagtcatataatcatat |
258 |
Q |
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| T |
40426568 |
attcaaaaattaaaaaatataaataagcaaagatatatggtcatttatgcattattacaaccattataatcgtataaaaaaactagtcatataatcatat |
40426469 |
T |
|
| Q |
259 |
ttcactgtataataaagtggtgtcatggtaagatatgatttgatagttgtgtaaaatacttttatacttttaatgcattgtcattaaacccatattgagt |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40426468 |
ttcactgtataataaagtggtgtcatggtaagatatgatttgatagttgtgtaaaatacttttacacttttaatgcattgtcattaaacccatattgagt |
40426369 |
T |
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| Q |
359 |
attaaactgataatttagataactagcaaaaatgatttgtttaacatctcttca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40426368 |
attaaactgataatttagataactagcaaaaatgatttgtttaacatctcttca |
40426315 |
T |
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