View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2451_low_5 (Length: 394)
Name: NF2451_low_5
Description: NF2451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2451_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 14869179 - 14868838
Alignment:
| Q |
16 |
attaggagtgtcggcgttgaagctttccattccttgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaa |
115 |
Q |
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| T |
14869179 |
attaggagtgtcggcgttgaagctttccattcctcgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaa |
14869080 |
T |
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| Q |
116 |
tcgcggtcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctacta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869079 |
tcgcggtcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctacta |
14868980 |
T |
|
| Q |
216 |
cgaaaatgaggtgactttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatctggtt |
315 |
Q |
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| T |
14868979 |
caaaaatgaggtgactttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatctggtt |
14868880 |
T |
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| Q |
316 |
tttgttttaaggcaaaggttgataagaggaagagaaaatgtg |
357 |
Q |
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| T |
14868879 |
tttgttttaaggcaaaggttgataagaggaagagaaaatgtg |
14868838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 16909490 - 16909800
Alignment:
| Q |
17 |
ttaggagtgtcggcgttgaagctttccattccttgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaat |
116 |
Q |
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| T |
16909490 |
ttaggagtgtcagcattgaaactttccattccttgtggcaaaccaggtacttgtggaaacttgacaatgtgagttctaatggaccgaccgcgacttgaat |
16909589 |
T |
|
| Q |
117 |
cgcggtcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctactac |
216 |
Q |
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|| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16909590 |
cgtggtcgatggaggtttgaaaaatggctgcatttgctggtgtggtgattatggtaacatccacattatgcatagcaaaaagccttgctatgtctactac |
16909689 |
T |
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| Q |
217 |
gaaaatgaggtgac--tttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatctggt |
314 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||| |||| | | |
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| T |
16909690 |
gaaaatgaggtgactttttttgatataaagggaagaaaaacagcttttaacattgtttcttcttcaactttcacaccaaaggattccattagaaattaga |
16909789 |
T |
|
| Q |
315 |
ttttgttttaa |
325 |
Q |
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||||||||||| |
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| T |
16909790 |
ttttgttttaa |
16909800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 12611293 - 12611241
Alignment:
| Q |
158 |
gtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtc |
210 |
Q |
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|||||||||||||| | ||||||||||||||||||||| || ||||| ||||| |
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| T |
12611293 |
gtggtgattatggtgatatccacaccatgcatagcaaatagtcttgccatgtc |
12611241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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