View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2451_low_9 (Length: 239)

Name: NF2451_low_9
Description: NF2451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2451_low_9
NF2451_low_9
[»] chr1 (11 HSPs)
chr1 (1-223)||(9299766-9299988)
chr1 (1-223)||(9257722-9257943)
chr1 (3-222)||(9466949-9467168)
chr1 (54-222)||(9364070-9364238)
chr1 (1-222)||(9242753-9242974)
chr1 (54-222)||(9337211-9337379)
chr1 (1-187)||(8962012-8962198)
chr1 (24-187)||(8939085-8939248)
chr1 (24-187)||(8926659-8926822)
chr1 (24-148)||(9438005-9438129)
chr1 (24-148)||(9420922-9421046)
[»] chr3 (1 HSPs)
chr3 (1-229)||(9171163-9171391)
[»] scaffold0690 (1 HSPs)
scaffold0690 (1-214)||(1287-1500)
[»] chr6 (1 HSPs)
chr6 (1-214)||(15910606-15910819)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9299988 - 9299766
Alignment:
Q  1 tcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299988 tcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatctt 9299889  T
Q  101 atccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9299888 atccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattctttcatga 9299789  T
Q  201 tcttcgcctttcatcttgaaatg 223  Q
    |||||||||||||||||||||||    
T  9299788 tcttcgcctttcatcttgaaatg 9299766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9257722 - 9257943
Alignment:
Q  1 tcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatctt 100  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  9257722 tcccatctccttctgcgttattgatcatcttaacagcaactagaatttgacttgataattg-cctttgtaaacagctccttgagctccttctccgatctt 9257820  T
Q  101 atccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatga 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9257821 atccttaaatttgtttgtaattctcttgatgtcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattctttcatga 9257920  T
Q  201 tcttcgcctttcatcttgaaatg 223  Q
    |||||||||||||||||||||||    
T  9257921 tcttcgcctttcatcttgaaatg 9257943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 9466949 - 9467168
Alignment:
Q  3 ccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttat 102  Q
    |||||||| |||| |||||||||||||||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9466949 ccatctccctcagtgttattgagcatcttaacggcaacgagaatttggcttgacaatttacctttgtaaacagctccatgagctccttctccgatcttat 9467048  T
Q  103 ccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatgatc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  9467049 ccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatc 9467148  T
Q  203 ttcgcctttcatcttgaaat 222  Q
    ||||||||||||||||||||    
T  9467149 ttcgcctttcatcttgaaat 9467168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 9364238 - 9364070
Alignment:
Q  54 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 153  Q
    ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| || ||||    
T  9364238 gataacttacctttataaacagctccatgagccccttcgcctatcttatctttaaatttatttgtaattctctttaagtctgcataagagaacctagttg 9364139  T
Q  154 gctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaat 222  Q
    |||||||||||   |||||||||||||||||||| ||||||  ||||||||||| ||||||||| ||||    
T  9364138 gctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatcttaaaat 9364070  T

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Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9242753 - 9242974
Alignment:
Q  1 tcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatctt 100  Q
    |||||||| | || || ||||| || ||||| || || ||| |||||||  | |||||||||||||| ||||||||||||||||  ||||| || |||||    
T  9242753 tcccatcttcctctgcattattaagaatcttcacggctactagaatttggttcgataatttacctttataaacagctccatgagtcccttcgcctatctt 9242852  T
Q  101 atccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatga 200  Q
    ||| | |||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||||   |||||||||||||||||||| ||||||  ||||    
T  9242853 atcttcaaatttatttgtaattctctttatgtctgcataagagaacctagttggctttaaagccctgtaatccttcaaaaagttttcaattcttgtatga 9242952  T
Q  201 tcttcgcctttcatcttgaaat 222  Q
    ||||| | ||||||||| ||||    
T  9242953 tcttcacttttcatcttaaaat 9242974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 9337379 - 9337211
Alignment:
Q  54 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 153  Q
    ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| || ||||    
T  9337379 gataacttacctttataaacagctccatgagccccttcgcctatcttatctttaaatttatttgtaattctctttaagtctgcataagagaacctagttg 9337280  T
Q  154 gctttaaagc-ctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaat 222  Q
    |||||||||| ||| |||||||||||||||||||| ||||||  ||||||||||| ||||||||| ||||    
T  9337279 gctttaaagcactg-taatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatcttaaaat 9337211  T

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Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 8962198 - 8962012
Alignment:
Q  1 tcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatctt 100  Q
    ||||||||||||| |  ||||| |||||||| ||||||||  |||||||||| ||||||||||||||||| |||||||||||||||||||| || | |||    
T  8962198 tcccatctccttctgtattattaagcatcttcacagcaacaagaatttgactcgataatttacctttgtagacagctccatgagctccttcgcccagctt 8962099  T
Q  101 atccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttc 187  Q
     ||||| ||||  |  ||||||||||| || || ||||| || ||||| ||||||||| | || | |||||||||||||||||||||    
T  8962098 ttccttgaattgatcagtaattctcttgatatcggcataagaaaatctagttggctttgacgcttcataatccttcaaaaagttttc 8962012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 8939248 - 8939085
Alignment:
Q  24 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 123  Q
    |||||||| || |||||  |||||||||| |||||||||||||| || |||||||||||||||||||| || | ||| || || ||||  | ||||||||    
T  8939248 agcatcttcacggcaacaagaatttgactcgataatttacctttatagacagctccatgagctccttcccctagcttttctttgaattgatctgtaattc 8939149  T
Q  124 tctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttc 187  Q
    |||| || || ||||| || ||||| ||||||||| | || |  ||||||||||||||||||||    
T  8939148 tcttgatatctgcataagaaaatcttgttggctttgacgcttcgtaatccttcaaaaagttttc 8939085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 8926822 - 8926659
Alignment:
Q  24 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 123  Q
    |||||||| ||||||||   ||||||| | |||||||||||||| || |||||||||||||||||||| || | ||| || || || |  |  |||||||    
T  8926822 agcatcttcacagcaaccataatttgattcgataatttacctttatagacagctccatgagctccttcgcctagcttttctttgaactgatccgtaattc 8926723  T
Q  124 tctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttc 187  Q
    |||| || || ||||| || ||||| ||||||||| | || | |||||||||||||||||||||    
T  8926722 tcttgatatctgcataagaaaatctagttggctttgacgcttcataatccttcaaaaagttttc 8926659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 9438005 - 9438129
Alignment:
Q  24 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 123  Q
    |||||||| ||||| ||  |||||| | | ||||||||||||||| |||| || |||||||||||||| || | ||  ||| |||| || |||||||| |    
T  9438005 agcatcttcacagccacaagaatttcattagataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcc 9438104  T
Q  124 tctttatgtcagcataggagaatct 148  Q
    ||||||| |||||||| ||||||||    
T  9438105 tctttatatcagcataagagaatct 9438129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 9420922 - 9421046
Alignment:
Q  24 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 123  Q
    |||||||| ||||| ||  |||||| | | ||||||||||||||| |||| || |||||||||||||| || | ||  ||| |||| || |||||||| |    
T  9420922 agcatcttcacagccacaagaatttcattagataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcc 9421021  T
Q  124 tctttatgtcagcataggagaatct 148  Q
    ||||||| ||| |||| ||||||||    
T  9421022 tctttatatcaacataagagaatct 9421046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9171391 - 9171163
Alignment:
Q  1 tcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatctt 100  Q
    |||||||||| || | |||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || | |||    
T  9171391 tcccatctccctctgtgttatttagcatcttaacaccaactagaatttggcttgataatttacctttgtaaacagctccatgagctccttcgcctaactt 9171292  T
Q  101 atccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatga 200  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  9171291 atccttaaatttatttgtgattctctttatgtcagcataggagaatctggttggctttaaagccttgtaatccttcaaaaagttttcgattcttttatga 9171192  T
Q  201 tcttcgcctttcatcttgaaatgatgatg 229  Q
    |||||||||||||||||||||||||||||    
T  9171191 tcttcgcctttcatcttgaaatgatgatg 9171163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 1500 - 1287
Alignment:
Q  1 tcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatctt 100  Q
    |||||||||| || || ||||| || ||||| || || ||| |||||||  | |||||||||||||| ||||||||||||||||| ||||| || |||||    
T  1500 tcccatctccctctgcattattaagaatcttcacggctactagaatttggttcgataatttacctttataaacagctccatgagccccttcccctatctt 1401  T
Q  101 atccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatga 200  Q
    ||| |||||||| |||||||||||||| | ||| ||||| ||||| || |||||||||||||||   |||||||||||||||||||| ||||||  ||||    
T  1400 atctttaaatttatttgtaattctcttcaagtctgcataagagaacctagttggctttaaagccctgtaatccttcaaaaagttttcaattcttgtatga 1301  T
Q  201 tcttcgcctttcat 214  Q
    ||||||||||||||    
T  1300 tcttcgcctttcat 1287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 15910606 - 15910819
Alignment:
Q  1 tcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatctt 100  Q
    |||||||||| || || ||||| || ||||| || || ||| |||||||  | |||||||||||||| ||||||||||||||||| ||||| || |||||    
T  15910606 tcccatctccctctgcattattaagaatcttcacggctactagaatttggttcgataatttacctttataaacagctccatgagccccttcccctatctt 15910705  T
Q  101 atccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatga 200  Q
    ||| |||||||| ||||||| |||||| | ||| ||||| ||||| || |||||||||||||||   |||||||||||||||||||| ||||||  ||||    
T  15910706 atctttaaatttatttgtaaatctcttcaagtctgcataagagaacctagttggctttaaagccctgtaatccttcaaaaagttttcaattcttgtatga 15910805  T
Q  201 tcttcgcctttcat 214  Q
    ||||||||||||||    
T  15910806 tcttcgcctttcat 15910819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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