View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_high_10 (Length: 380)
Name: NF2452_high_10
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 108 - 365
Target Start/End: Complemental strand, 41800655 - 41800398
Alignment:
| Q |
108 |
tttctgttgaaaaaatgacatatttcaatagaatcacaaatgtcattgttatgctggacatgagaacacgtcttcaattaaaattgttggtgcaacaaag |
207 |
Q |
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| T |
41800655 |
tttctgttgaaaaaatgacatatttcaatagaatcacaaatgtcattgttatgttggacatgagaacacgtcttcaattaaaattgttgatgcaacaaag |
41800556 |
T |
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| Q |
208 |
ttctttaatcaattttcttagaacaaaatagtttgtataaccctaaatgtaataggattgcaaaggatctatcctagtccatccaagaagtaataacaag |
307 |
Q |
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| T |
41800555 |
ttctttaatcaattttcttagaacaaaatagtttgtataaccctaaatgtaataggattgcaaaggatctatcctagtccatccaagaagtaataacaag |
41800456 |
T |
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| Q |
308 |
cgcagtcctattcctattcctatccctcgagttagaatcaaattgaaaatgtaattaa |
365 |
Q |
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| T |
41800455 |
cgcagtcctattcctattcctatccctcgagttagaatcaaattgaaaatgtaattaa |
41800398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 41801903 - 41801793
Alignment:
| Q |
1 |
actaccattgagaatgatagaatgaaaatcttcgtgaacatcgcttttataatgggtgataatgttaagagtttcacataaatagagattagtgt---at |
97 |
Q |
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| T |
41801903 |
actaccatcgagaatgatagaatgaaaatcttcgtgaacatcgcttttataacgggtgataatgttaagagtttcacataaatagagattagtgttcaat |
41801804 |
T |
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| Q |
98 |
gcattagtact |
108 |
Q |
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| T |
41801803 |
gcattagtact |
41801793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 41801650 - 41801572
Alignment:
| Q |
1 |
actaccattgagaatgatagaatgaaaatcttcgtgaacatcgcttttataatgggtgataatgttaagagtttcacat |
79 |
Q |
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| T |
41801650 |
actaccattgagaatgatagagtgaaaatcttcatgaacattgattttaaaacgggtgataatgttgagagtttcacat |
41801572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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